PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019174205.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GRAS
Protein Properties Length: 588aa    MW: 67086.6 Da    PI: 6.2143
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019174205.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS2782.9e-852165864374
            GRAS   4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalkl...fsevsPilkfs 94 
                      Ll+ Ae v ++++  a+ +L+   +l+s++g+ +qRl+ yf eAL+ ++   +++++ + +  ++ +  ++++    +      ++ +P+l++ 
  XP_019174205.1 216 HLLASAEKVGQKKFDSAKDFLSMCDKLSSKNGNLVQRLVYYFSEALRDKVDWqTGEKTPENFGKKQIEYLKEKHMSPKQ-CilaTHQNFPFLQVI 309
                     58999*********************************************97456666666666655533333333333.24557899******* PP

            GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLa.sRp..egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrl 186
                      ++  qa+ e v +++++HiiD++i +G+QW  L+qaLa +R   +   +lRi +++    +s  ++ee+g++L++fA++l++pf+f+++ ++++
  XP_019174205.1 310 EVASVQAVIEHVPEAKKIHIIDLEIRHGMQWTILMQALAaARHaeSFIENLRISALVI---KSGPMIEEIGKQLTSFADSLKIPFSFKIVKVQDI 401
                     **************************************97777433356*******99...589******************************* PP

            GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281
                      +++ ++++v+++Ea+aV  ++  +++ ++++ le+    +++++++++P+v+v++e ea++ns+ F++rf+e+l +ysa++dsle  l +++  
  XP_019174205.1 402 LEVNEQSFEVEEDEAVAVYGQFFFMTMISKQGGLEH----LMRVMRTIRPRVMVIIEVEANLNSPVFVNRFTESLFFYSAFLDSLEHFLKHKEYI 492
                     ****************************99999999....******************************************************* PP

            GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     r++vEre l+r+i+n+va+eg+er  rh +++ Wr+ + ++G+k+v++s +   qa+l+ ++++ ++  +++++ +sl++gWk+ pL+svSaW+
  XP_019174205.1 493 RAFVEREHLSRSISNIVAAEGEERMIRHVSMNVWRAFFARFGMKEVEMSMSSILQANLVFNNFPcGKYCTLDKDGKSLIIGWKRTPLFSVSAWK 586
                     ****************************************************************999899***********************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 588 aa     Download sequence    
MLGLNKSDVF GDVENNDDNM KAVKSRPPAN EVVEWGDSPE IAWFSSCQVL DQDGDETARK  60
EAPLVPRHKH EHQLQLAVVD CMSLDDLYFD EEASSGQPFS SAQITGNQEL SESKRKRAEN  120
AWPSSLKLLN NFQNRFRRLT GEKVNAAPSC SSNHDESREV NCCSSTRLLI NEVLQLAAHK  180
FIENSSHGDS ELNNLFPNSC WGLHGEDYKD VELLLHLLAS AEKVGQKKFD SAKDFLSMCD  240
KLSSKNGNLV QRLVYYFSEA LRDKVDWQTG EKTPENFGKK QIEYLKEKHM SPKQCILATH  300
QNFPFLQVIE VASVQAVIEH VPEAKKIHII DLEIRHGMQW TILMQALAAA RHAESFIENL  360
RISALVIKSG PMIEEIGKQL TSFADSLKIP FSFKIVKVQD ILEVNEQSFE VEEDEAVAVY  420
GQFFFMTMIS KQGGLEHLMR VMRTIRPRVM VIIEVEANLN SPVFVNRFTE SLFFYSAFLD  480
SLEHFLKHKE YIRAFVEREH LSRSISNIVA AEGEERMIRH VSMNVWRAFF ARFGMKEVEM  540
SMSSILQANL VFNNFPCGKY CTLDKDGKSL IIGWKRTPLF SVSAWKLI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.11e-51GRAS family protein