PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019174204.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GRAS
Protein Properties Length: 490aa    MW: 55715.7 Da    PI: 6.3983
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019174204.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS257.16.4e-791084754374
            GRAS   4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar..svselykalppsetseknsseelaalkl....fsevsPilk 92 
                     lL + A++v+++++ +a++lL    + as +g+++qR++ yf++AL++r+     +++++   + se+ + n++e++++++       +  P+ +
  XP_019174204.1 108 LLQASAKMVANQQFDRARKLLGLCDQSASANGSTVQRIVYYFARALKERMDLdrDTETVS---EESEKIPVNVEEAAMSMEPaliaCAHDLPFSQ 199
                     67788********************************************98621233333...4444444556666666654544466778**** PP

            GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrl 186
                     ++++t  +aIl+ ++++++vH +Df+i+ G +W  ++q La+R+e+p  sl+iT+vg     sk+++e+tg+ L++fAe++++pf+f+++ + ++
  XP_019174204.1 200 VTNFTGVHAILDNIASARKVHLVDFEIGSGSHWTIIMQDLANRSEPPIeSLKITAVGT----SKRRIERTGKWLSSFAETMNLPFSFKAI-VCDI 289
                     ********************************************99877*********....9**************************5.7779 PP

            GRAS 187 edleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280
                     +dl+ e ++++  +E++aV   ++l +ll      +++ ++++ l+++ +P v+vv+e ea +n++sFl+rf + l+y++a +d++++ + r+++
  XP_019174204.1 290 KDLRKELFELELaDEVVAVYAEYRLSTLLV----CPNQLHTLIALIQTFNPSVMVVAEAEAYTNTPSFLARFYNLLSYCTATLDCIATCMDRDHQ 380
                     ***9999999988***************93....3444667****************************************************** PP

            GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      r+  E+++  + i+nv+++ega+r+ rhe+   Wr+ + ++G ++ +ls++a  qa+ l+r+++ +   +++ + +s+++ Wk+ p+ s+S+W+
  XP_019174204.1 381 YRKITEQVIHWELIRNVITTEGADRIYRHEKIDFWRQFFARFGIEEEELSHSALFQASFLIRRYPsWSHCSLDMSGKSMIIKWKGTPVKSLSVWK 475
                     ********99999****************************************************77779999*********************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    
MSVETRKNRD NQPLEDDSVV VAEPKREQPS ESSLQILQRY WSDSMHGGGK KLNKIRIDKP  60
PSNSSVPSTE EIMQIARSKL EHCCVHSIVF EHSYLLGDIK GDVELALLLQ ASAKMVANQQ  120
FDRARKLLGL CDQSASANGS TVQRIVYYFA RALKERMDLD RDTETVSEES EKIPVNVEEA  180
AMSMEPALIA CAHDLPFSQV TNFTGVHAIL DNIASARKVH LVDFEIGSGS HWTIIMQDLA  240
NRSEPPIESL KITAVGTSKR RIERTGKWLS SFAETMNLPF SFKAIVCDIK DLRKELFELE  300
LADEVVAVYA EYRLSTLLVC PNQLHTLIAL IQTFNPSVMV VAEAEAYTNT PSFLARFYNL  360
LSYCTATLDC IATCMDRDHQ YRKITEQVIH WELIRNVITT EGADRIYRHE KIDFWRQFFA  420
RFGIEEEELS HSALFQASFL IRRYPSWSHC SLDMSGKSMI IKWKGTPVKS LSVWKFCPVK  480
NNTEKMNSEA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.16e-43GRAS family protein