PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019173832.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C2H2

Protein Properties

Length: 374aa MW: 42894 Da PI: 7.0534

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019173832.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.3	0.00051	80	102	3	23
ET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 3 Cp..dCgksFsrksnLkrHirtH 23 C+ Cgk+F + L++H H XP_019173832.1 80 CSyeGCGKTFIDAGALRKHSHIH 102 77779**************7766 PP
2	zf-C2H2	15	7.1e-05	107	131	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y C+ +Cgk F ++s LkrH H XP_019173832.1 107 YICHyeNCGKKFLDSSKLKRHFLIH 131 89*******************8877 PP
3	zf-C2H2	21.3	7.2e-07	137	161	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y Cp Cgk Fs nLk+H++tH XP_019173832.1 137 YMCPheGCGKAFSLDFNLKSHMKTH 161 89**********************9 PP
4	zf-C2H2	14.7	8.9e-05	167	192	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 ++Cp Cgk++ + + Lk+H + H XP_019173832.1 167 HVCPypECGKRYAHEYKLKNHVASaH 192 79*******************99886 PP
5	zf-C2H2	16.3	2.8e-05	230	255	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 y+Cp C+k + + + L+ H+r+ H XP_019173832.1 230 YVCPyeGCDKAYIHEYKLNLHLRKeH 255 99**********************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 374 aa Download sequence
MEPPALHNLF DRRPIITKSK APATKWFKEW VPQDVVATGG KCFLLKWVNE ATLKALKEKP 60 KEPEVPEPEP QPATDVLFLC SYEGCGKTFI DAGALRKHSH IHGERQYICH YENCGKKFLD 120 SSKLKRHFLI HTGERNYMCP HEGCGKAFSL DFNLKSHMKT HSQENYHVCP YPECGKRYAH 180 EYKLKNHVAS AHHKTTMPDA TKYNQPIEKP NKTAKSSGAV HASASSNRPY VCPYEGCDKA 240 YIHEYKLNLH LRKEHPGHFP DESAKNAQPA ATENEMDEDV AQDTYPVKRK NTKTQKQTRP 300 KPNLKPPPAK ARRQNAIDSP ANLSAVNKPW PVKEEAYEEG EDSEETEEEK FNVGDQWRYR 360 ENEDDEDEDT ELED

Sequence ? help Back to Top

Protein Sequence Length: 374 aa Download sequence

MEPPALHNLF DRRPIITKSK APATKWFKEW VPQDVVATGG KCFLLKWVNE ATLKALKEKP  60
KEPEVPEPEP QPATDVLFLC SYEGCGKTFI DAGALRKHSH IHGERQYICH YENCGKKFLD  120
SSKLKRHFLI HTGERNYMCP HEGCGKAFSL DFNLKSHMKT HSQENYHVCP YPECGKRYAH  180
EYKLKNHVAS AHHKTTMPDA TKYNQPIEKP NKTAKSSGAV HASASSNRPY VCPYEGCDKA  240
YIHEYKLNLH LRKEHPGHFP DESAKNAQPA ATENEMDEDV AQDTYPVKRK NTKTQKQTRP  300
KPNLKPPPAK ARRQNAIDSP ANLSAVNKPW PVKEEAYEEG EDSEETEEEK FNVGDQWRYR  360
ENEDDEDEDT ELED

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G06634.1	1e-126	C2H2 family protein