PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019173313.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GRAS
Protein Properties Length: 505aa    MW: 57051.7 Da    PI: 6.2028
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019173313.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3497.4e-1071205043374
            GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                     e L+e A+av++++  ++q+l++ l+el+sp+gd+ q+laayf++AL +r++++++++y++l + ++++ + +++ +++  f+evsP+ +f+h++
  XP_019173313.1 120 EILVETARAVAEKNSGRVQQLMWMLNELSSPYGDTDQKLAAYFLQALFSRMTDTGDRTYRSLVSASDKTCSFESTRKMVLKFQEVSPWTTFGHVA 214
                     789***********************************************************8888876665555555556************** PP

            GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..........skeeleetgerLakfAeelgvpfefnvlv 182
                     +N aI+ea+ege+++Hi+D++ + ++QWp+Ll+aLa+R++++p+lR+T+v+ ++++           ++ ++e+g+r++kf + +gvpf+fnv++
  XP_019173313.1 215 CNGAIMEAFEGESKLHIVDISNTFCTQWPTLLEALATRTDETPHLRLTTVVVNKAFggggsggaasIQKVMKEIGNRMEKFGRLMGVPFKFNVIH 309
                     ****************************************************88889******999999*************************8 PP

            GRAS 183 ak.rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse....sFlerflealeyysalfdsle 272
                     ++ +l+dl+l++L++k++Eala+n+v +lh++     ++ s+rd +++++++l+P++++vve+ea+ + +    +F++ f e+l+++ + f+sl+
  XP_019173313.1 310 HSgDLSDLDLSALDIKEDEALAINSVGALHSVT----AVGSRRDYLISVFRRLQPRILTVVEEEANVDVGvegfDFVRDFQECLRWFRVYFESLD 400
                     888*****************************8....8888999********************99855555679******************** PP

            GRAS 273 aklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve....eesgslvlgWk 363
                     +++p++s+er ++Er+  gr+iv++vac  ++++er+et+e+W++rl++aGF+p+p+s+++ +++++llr++  +g+++     + s+ ++l Wk
  XP_019173313.1 401 ESFPKTSNERLMLERQ-AGRAIVDLVACPPSQSIERRETAERWSRRLHAAGFTPIPYSDEVCDDVRALLRRYR-EGWTMApcsgDLSAGIFLSWK 493
                     ****************.********************************************************.99999976656699999**** PP

            GRAS 364 drpLvsvSaWr 374
                     d+p+v++SaWr
  XP_019173313.1 494 DQPVVWASAWR 504
                     **********8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 505 aa     Download sequence    
MDTLFRLVSL QQSDQSFNSS RTSSSSRSSR HNNYHHHQED EECFNFFMDE DDFSSSSSKH  60
PYPPSSSSYH HHHHQYQQFS NTPTPTTTSS TPPHSYSHPQ PTFDPNLEFG SAFSGKWATE  120
ILVETARAVA EKNSGRVQQL MWMLNELSSP YGDTDQKLAA YFLQALFSRM TDTGDRTYRS  180
LVSASDKTCS FESTRKMVLK FQEVSPWTTF GHVACNGAIM EAFEGESKLH IVDISNTFCT  240
QWPTLLEALA TRTDETPHLR LTTVVVNKAF GGGGSGGAAS IQKVMKEIGN RMEKFGRLMG  300
VPFKFNVIHH SGDLSDLDLS ALDIKEDEAL AINSVGALHS VTAVGSRRDY LISVFRRLQP  360
RILTVVEEEA NVDVGVEGFD FVRDFQECLR WFRVYFESLD ESFPKTSNER LMLERQAGRA  420
IVDLVACPPS QSIERRETAE RWSRRLHAAG FTPIPYSDEV CDDVRALLRR YREGWTMAPC  480
SGDLSAGIFL SWKDQPVVWA SAWRP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37650.10.0GRAS family protein