PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019173179.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GATA
Protein Properties Length: 378aa    MW: 40887.5 Da    PI: 4.527
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019173179.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA511.9e-16229264134
            GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 
                     C++Cg+++  Tp +Rrgpdg++tLCnaCGl ++ kg
  XP_019173179.1 229 CQHCGVSEngTPAMRRGPDGPRTLCNACGLVWANKG 264
                     ********************************9987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    
MPAAMEAGNL TSLQPRPYDV PLRREFANVP VGADEVGGRF EADDVSGGGC EEDMRGAEVV  60
QVNSAAPPPC SVDGGAVISS FHIRPSELTV SFEGQVYVFP AVTPDKLQAV LLLLGGIETP  120
ENVPSTEFQS QQCNKVLEGA SPLAVCASTA PNVPRRIASL MRFREKRKER CFEKKIRYTC  180
RKEVAQRMHR KNGQFASMKE SDKTSVDIFE SGDGKPGSDP VSVDRLRSCQ HCGVSENGTP  240
AMRRGPDGPR TLCNACGLVW ANKGILRDLS KGGKNIAFSK SENSNQNPDE EGSPEEMKPM  300
LMGNENPLIG PADQDFREAA ENYTDGSPIG IGNSSINPDE EETLDEFANA SGSDFDISTS  360
FDDEVDIHSH MGTDWPGR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.19e-54GATA family protein