PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT3G21175.1
Common NameGATA24, MXL8.2, TIFY2B, ZML1
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family GATA
Protein Properties Length: 297aa    MW: 32882.6 Da    PI: 6.7956
Description ZIM-like 1
Gene Model
Gene Model ID Type Source Coding Sequence
AT3G21175.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.95.8e-18219255135
         GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                  C++Cgt++  Tp++Rrgpdg++tLCnaCGl+++ kg+
  AT3G21175.1 219 CRHCGTSEksTPMMRRGPDGPRTLCNACGLMWANKGT 255
                  **********************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009794.5E-1373108IPR010399Tify domain
PROSITE profilePS5132014.21773108IPR010399Tify domain
PfamPF062002.9E-1278107IPR010399Tify domain
PROSITE profilePS5101712.898143185IPR010402CCT domain
PfamPF062033.1E-15143185IPR010402CCT domain
SMARTSM004018.6E-10213266IPR000679Zinc finger, GATA-type
PROSITE profilePS501149.447213261IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.24E-13215277No hitNo description
Gene3DG3DSA:3.30.50.105.6E-16218260IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.36E-16219268No hitNo description
PROSITE patternPS003440219246IPR000679Zinc finger, GATA-type
PfamPF003206.9E-16219255IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000013anatomycauline leaf
PO:0000037anatomyshoot apex
PO:0000230anatomyinflorescence meristem
PO:0000293anatomyguard cell
PO:0008019anatomyleaf lamina base
PO:0009005anatomyroot
PO:0009006anatomyshoot system
PO:0009009anatomyplant embryo
PO:0009010anatomyseed
PO:0009025anatomyvascular leaf
PO:0009029anatomystamen
PO:0009030anatomycarpel
PO:0009031anatomysepal
PO:0009032anatomypetal
PO:0009046anatomyflower
PO:0009047anatomystem
PO:0009052anatomyflower pedicel
PO:0020030anatomycotyledon
PO:0020038anatomypetiole
PO:0020100anatomyhypocotyl
PO:0020137anatomyleaf apex
PO:0025022anatomycollective leaf structure
PO:0025195anatomypollen tube cell
PO:0025281anatomypollen
PO:0001054developmental stagevascular leaf senescent stage
PO:0001078developmental stageplant embryo cotyledonary stage
PO:0001081developmental stagemature plant embryo stage
PO:0001185developmental stageplant embryo globular stage
PO:0004507developmental stageplant embryo bilateral stage
PO:0007064developmental stageLP.12 twelve leaves visible stage
PO:0007095developmental stageLP.08 eight leaves visible stage
PO:0007098developmental stageLP.02 two leaves visible stage
PO:0007103developmental stageLP.10 ten leaves visible stage
PO:0007115developmental stageLP.04 four leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007611developmental stagepetal differentiation and expansion stage
PO:0007616developmental stageflowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MDDLHGRNGR MHIGVAQNPM HVQYEDHGLH HIDNENSMMD DHADGGMDEG VETDIPSHPG  60
NSADNRGEVV DRGIENGDQL TLSFQGQVYV FDRVSPEKVQ AVLLLLGGRE VPHTLPTTLG  120
SPHQNNRVLG LSGTPQRLSV PQRLASLLRF REKRKGRNFD KTIRYTVRKE VALRMQRKKG  180
QFTSAKSSND DSGSTGSDWG SNQSWAVEGT ETQKPEVLCR HCGTSEKSTP MMRRGPDGPR  240
TLCNACGLMW ANKGTLRDLS KVPPPQTPQH LSLNKNEDAN LEADQMMEVT GDISNTQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.202860.0bud| flower| root| silique
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1453387800.0
Genevisible258041_at0.0
Expression AtlasAT3G21175-
AtGenExpressAT3G21175-
ATTED-IIAT3G21175-
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269|PubMed:14966217}.
Functional Description ? help Back to Top
Source Description
TAIRmember of a novel family of plant-specific GATA-type transcription factors.
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Function -- GeneRIF ? help Back to Top
  1. The ZML2 and ZML1 GATA transcription factors are two essential components of the cry1-mediated photoprotective response.
    [PMID: 22786870]
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00369DAP27203113Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT3G21175.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Interaction ? help Back to Top
Source Intact With
BioGRIDAT3G21175, AT5G11270, AT1G51600
IntActSearch Q8GXL7
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT3G21175
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB1190600.0AB119060.1 Arabidopsis thaliana ZML1 mRNA for GATA-type zinc finger protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_566676.10.0ZIM-like 1
SwissprotQ8GXL70.0GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A178V9K50.0A0A178V9K5_ARATH; ZML1
STRINGAT3G21175.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36842659
Representative plantOGRP8311661
Publications ? help Back to Top
  1. Seki M, et al.
    Functional annotation of a full-length Arabidopsis cDNA collection.
    Science, 2002. 296(5565): p. 141-5
    [PMID:11910074]
  2. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]
  3. Jeong MJ,Jeong MJ,Shih MC
    Interaction of a GATA factor with cis-acting elements involved in light regulation of nuclear genes encoding chloroplast glyceraldehyde-3-phosphate dehydrogenase in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2003. 300(2): p. 555-62
    [PMID:12504119]
  4. Yamada K, et al.
    Empirical analysis of transcriptional activity in the Arabidopsis genome.
    Science, 2003. 302(5646): p. 842-6
    [PMID:14593172]
  5. Shikata M,Takemura M,Yokota A,Kohchi T
    Arabidopsis ZIM, a plant-specific GATA factor, can function as a transcriptional activator.
    Biosci. Biotechnol. Biochem., 2003. 67(11): p. 2495-7
    [PMID:14646219]
  6. Shikata M, et al.
    Characterization of Arabidopsis ZIM, a member of a novel plant-specific GATA factor gene family.
    J. Exp. Bot., 2004. 55(397): p. 631-9
    [PMID:14966217]
  7. Reyes JC,Muro-Pastor MI,Florencio FJ
    The GATA family of transcription factors in Arabidopsis and rice.
    Plant Physiol., 2004. 134(4): p. 1718-32
    [PMID:15084732]
  8. Liu PP,Koizuka N,Martin RC,Nonogaki H
    The BME3 (Blue Micropylar End 3) GATA zinc finger transcription factor is a positive regulator of Arabidopsis seed germination.
    Plant J., 2005. 44(6): p. 960-71
    [PMID:16359389]
  9. Manfield IW,Devlin PF,Jen CH,Westhead DR,Gilmartin PM
    Conservation, convergence, and divergence of light-responsive, circadian-regulated, and tissue-specific expression patterns during evolution of the Arabidopsis GATA gene family.
    Plant Physiol., 2007. 143(2): p. 941-58
    [PMID:17208962]
  10. Vanholme B,Grunewald W,Bateman A,Kohchi T,Gheysen G
    The tify family previously known as ZIM.
    Trends Plant Sci., 2007. 12(6): p. 239-44
    [PMID:17499004]
  11. Wang Y, et al.
    Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis.
    Plant Physiol., 2008. 148(3): p. 1201-11
    [PMID:18775970]
  12. Arabidopsis Interactome Mapping Consortium
    Evidence for network evolution in an Arabidopsis interactome map.
    Science, 2011. 333(6042): p. 601-7
    [PMID:21798944]
  13. Shaikhali J, et al.
    The CRYPTOCHROME1-dependent response to excess light is mediated through the transcriptional activators ZINC FINGER PROTEIN EXPRESSED IN INFLORESCENCE MERISTEM LIKE1 and ZML2 in Arabidopsis.
    Plant Cell, 2012. 24(7): p. 3009-25
    [PMID:22786870]