PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019173086.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MIKC_MADS

Protein Properties

Length: 239aa MW: 27666.9 Da PI: 10.0244

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019173086.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	86.6	1.4e-27	10	59	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n++ rqvtfskRrng+lKKA ELS+LCdaev +iifsst kly+++s XP_019173086.1 10 RIDNSTSRQVTFSKRRNGLLKKARELSILCDAEVGLIIFSSTEKLYDFAS 59 8***********************************************86 PP
2	K-box	86.4	5.8e-29	83	170	11	98
K-box 11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 ++ + +q+e+a L+++++ Lq+++R+llGe+L+ L++k+L +Le+qLe+slk iR+kK+++l ++ieel +k + + +enk+L kk+ XP_019173086.1 83 MSEVKFWQREAATLRQQLHYLQETHRQLLGEELSGLNVKDLTNLENQLETSLKGIRKKKEKVLSDEIEELNRKGNLICQENKELYKKV 170 56789********************************************************************************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 239 aa Download sequence
MGRGKIVIRR IDNSTSRQVT FSKRRNGLLK KARELSILCD AEVGLIIFSS TEKLYDFAST 60 SMKSVIERYT KMKEEQPQLM NPMSEVKFWQ REAATLRQQL HYLQETHRQL LGEELSGLNV 120 KDLTNLENQL ETSLKGIRKK KEKVLSDEIE ELNRKGNLIC QENKELYKKV NLIRQENIEM 180 QKKIYGPGRI NEPDGSSQTT NVVSPRYDLQ PPINLQLSQP QIQKNETPIS VMKLGLQLH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	138	143	RKKKEK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37940.1	5e-96	MIKC_MADS family protein