PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019173060.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GRAS
Protein Properties Length: 589aa    MW: 64183.3 Da    PI: 4.52
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019173060.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3634.1e-1112225882373
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                      ++L++cA+  ++++  +a++ L rl+e +s+dgdp++R+a yf eAL +rl+r    l +++p   ++  + +e + ++k+f++++P+ kf+hl
  XP_019173060.1 222 LKALVDCARL-AESEPDNATKSLVRLRESVSQDGDPTERVAYYFSEALYSRLSR----LPAKIPLAVEA--SLEEFALSYKAFYDACPYSKFAHL 309
                     689******5.5668999************************************....44444333333..489999****************** PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     taNqaIlea+e+++r+Hi+Df+i qG+QW+aLlqaLa+Rp+g+p  +Ri g+ +p  g   + +l +tg+rL++fA+ l+++fef++ v + + +
  XP_019173060.1 310 TANQAILEATEKASRIHIVDFGIVQGIQWAALLQALATRPAGKPkYIRISGIPAPVLGksPTASLLATGNRLRDFAKVLDLNFEFDP-VLTPIPE 403
                     ****************************************766659********9988889999***********************.799**** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     l+ ++Lrv+p++alaVn++lql++llde++++ +   + L l ksl+P vv++ e e+++n+  Flerf++al+yys +f+sl+ ++pr+s er 
  XP_019173060.1 404 LNESSLRVDPDDALAVNFMLQLYNLLDETTATVE---AALTLAKSLNPSVVTLGEYELSLNRVGFLERFTNALNYYSLVFESLDPNMPRDSPERL 495
                     ***************************9999999...9********************************************************* PP

            GRAS 284 kvErellgreivnvvacegae.rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.lgWkdrpLvsvSaW 373
                      vEr llgr+i  +v  +++e +re +e +e+W+  +e+aGF+p+pls++a++qak ll +++ s  y + e+   ++ l W+d+pL+svS+W
  XP_019173060.1 496 QVERLLLGRRIAVMVGPAEQEtKRECTEDKEQWKILMENAGFEPLPLSHYAMSQAKILLWNYSySASYGLIESPPGFLsLAWNDEPLLSVSSW 588
                     ***************987777599999************************************9999*99888666666************** PP
Sequence ? help Back to Top
Protein Sequence    Length: 589 aa     Download sequence    
MAYMCTDSGN LMAIAQQVIK QKQQQEQQQQ QQQQLLGVNS FCLNPWQTPH PALSGSPTLG  60
YGLAGAPFAD PFQVPGGGAD GAEAGFQFPS LEQHAGGVFP FTDFGGGPGG EFDSDEWMES  120
LIGSSEFGLY GSDPFAGPSR LSVPSSAPSD LNRVIFSEAQ RNNNTCPLQP QTAEWAPTSS  180
SPPPQPSCIG TKQTSPTHRN DVAAAAGTSF SSPDNLSSKP LLKALVDCAR LAESEPDNAT  240
KSLVRLRESV SQDGDPTERV AYYFSEALYS RLSRLPAKIP LAVEASLEEF ALSYKAFYDA  300
CPYSKFAHLT ANQAILEATE KASRIHIVDF GIVQGIQWAA LLQALATRPA GKPKYIRISG  360
IPAPVLGKSP TASLLATGNR LRDFAKVLDL NFEFDPVLTP IPELNESSLR VDPDDALAVN  420
FMLQLYNLLD ETTATVEAAL TLAKSLNPSV VTLGEYELSL NRVGFLERFT NALNYYSLVF  480
ESLDPNMPRD SPERLQVERL LLGRRIAVMV GPAEQETKRE CTEDKEQWKI LMENAGFEPL  540
PLSHYAMSQA KILLWNYSYS ASYGLIESPP GFLSLAWNDE PLLSVSSWH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.10.0GRAS family protein