PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019173021.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 214aa MW: 23876.8 Da PI: 6.3981

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019173021.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	16.8	1.2e-05	176	203	3	30
HHHHHHHHHHHHHHHHHHHHHHCTSCCC CS HLH 3 rahnerErrRRdriNsafeeLrellPka 30 + h +Er+RR+ + ++f L +l+P + XP_019173021.1 176 QDHVLAERKRRETLTQRFISLSSLIPDL 203 56999*********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 214 aa Download sequence
MRCSGDHSIV AKPGMDHLST ENLFSEMEEV EDAAFLNEWM DTLDNNFVHF YPNDPFFPPA 60 YGTENSDGGV IRKPAVMNSV QCQPSASSSF ADSAVSRNPS GGIENPAVKV KMKMKTEMDH 120 RESSGKTMIS FMPSSSHYCS GRGNDDEHRE SLIRTIEFGE GKGKKGSAIR SPLQAQDHVL 180 AERKRRETLT QRFISLSSLI PDLKKVISNY IYFT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	182	187	ERKRRE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22750.1	3e-12	bHLH family protein