PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019172966.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MIKC_MADS
Protein Properties Length: 210aa    MW: 24049.2 Da    PI: 8.4716
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019172966.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.14.6e-281059251
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    ri+n++nrqvtfskRrng+lKKA+EL +LCdaev ++ifsstgkl+e++s
  XP_019172966.1 10 RIDNSTNRQVTFSKRRNGLLKKAKELGILCDAEVGLMIFSSTGKLHEFAS 59
                    8***********************************************86 PP
2K-box72.99.6e-2579158585
           K-box   5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkek 85 
                     ++ ++ +++ + +q+e+a L+++++n+q+ +R+l+Ge L  Ls+keLq+Le+qLe sl+ iR kK+++l++qi+el +k +
  XP_019172966.1  79 QSPQNPASELKFWQTEAAILRQQLHNMQEDHRKLMGE-LYGLSVKELQNLENQLEMSLRGIRMKKEQILIDQIQELTNKFQ 158
                     4444788999**************************8.9************************************998865 PP
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    
MGRGKVVIRR IDNSTNRQVT FSKRRNGLLK KAKELGILCD AEVGLMIFSS TGKLHEFAST  60
SSMRSVIERY NKTQDESLQS PQNPASELKF WQTEAAILRQ QLHNMQEDHR KLMGELYGLS  120
VKELQNLENQ LEMSLRGIRM KKEQILIDQI QELTNKFQVY GTRDPNTVNG DTISPYDFTI  180
SEESHAHIHL QLSQPQPQNF SDRATALDST
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37940.13e-79MIKC_MADS family protein