PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019172235.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family BBR-BPC
Protein Properties Length: 303aa    MW: 34072.9 Da    PI: 4.8613
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019172235.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind305.61.8e-931230328301
       GAGA_bind  28 lmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvenslasalpvgvqvlsgtksidslqqlsepqleds 122
                      m+++aerda+i ern+al e+k a+aerdma lqrd+a+aern al erdn++ al+l+e s++ ++   v+ ++g+++i+  q+  ++ ++  
  XP_019172235.1  12 YMAIMAERDAAILERNMALDERKRALAERDMAMLQRDAAIAERNTALEERDNAISALKLRESSMNDED--IVSKSPGAEHIHYQQE-MHEMISAA 103
                     69*********************************************************999977665..7888999999996666.77788888 PP

       GAGA_bind 123 avelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesader...........................skae 190
                     a++ +e+ +++ +++++ ++++ ++++k   +++k+ k kka+k  +    ++++v+ e    +                           ++ +
  XP_019172235.1 104 AYDPTENLTNDPFNVTDPTPQTANNPRKV--RQPKESKPKKASKLARVV--KREEVEVEDL--SwqavstfddwddgncgefvdasdeeqdKHLD 192
                     99977777777777777666655554443..444444444444444422..2233333332..12235668899************999887777 PP

       GAGA_bind 191 kksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDL 285
                       + d++l++v+ D s++PvPvCsCtG+++ CYkWGnGGWqSaCCtttiS+yPLP+ +++r +R++grKmS +af+klL++L+aeGydls p+DL
  XP_019172235.1 193 TWDEDFGLEQVNSDVSAMPVPVCSCTGTPQPCYKWGNGGWQSACCTTTISMYPLPQASHKRYSRVGGRKMSASAFSKLLSRLTAEGYDLSAPLDL 287
                     7789******************************************************************************************* PP

       GAGA_bind 286 kdhWAkHGtnkfvtir 301
                     kdhWAkHGtn++ t++
  XP_019172235.1 288 KDHWAKHGTNRYSTVK 303
                     **************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    
MMDQNNSTIR TYMAIMAERD AAILERNMAL DERKRALAER DMAMLQRDAA IAERNTALEE  60
RDNAISALKL RESSMNDEDI VSKSPGAEHI HYQQEMHEMI SAAAYDPTEN LTNDPFNVTD  120
PTPQTANNPR KVRQPKESKP KKASKLARVV KREEVEVEDL SWQAVSTFDD WDDGNCGEFV  180
DASDEEQDKH LDTWDEDFGL EQVNSDVSAM PVPVCSCTGT PQPCYKWGNG GWQSACCTTT  240
ISMYPLPQAS HKRYSRVGGR KMSASAFSKL LSRLTAEGYD LSAPLDLKDH WAKHGTNRYS  300
TVK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42520.24e-83BBR-BPC family protein