PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | AT5G42520.2 | ||||||||
Common Name | ATBPC6, BBR/BPC6, BPC6, MDH9.22 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
|
||||||||
Family | BBR-BPC | ||||||||
Protein Properties | Length: 338aa MW: 37680.6 Da PI: 9.6471 | ||||||||
Description | basic pentacysteine 6 | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GAGA_bind | 405.2 | 8.1e-124 | 1 | 338 | 1 | 301 |
GAGA_bind 1 mdddgsre..rnkgyye.pa.aslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvensla.. 92 mdd g+re r+k+ + ++ +s+k q+ms+iaerda+i+ernla+sekkaavaerdmaflqrd+a+aern+a++erd++l+al+++ens++ AT5G42520.2 1 MDDGGHREngRHKAAVQgQHqPSMK-----QVMSIIAERDAAIQERNLAISEKKAAVAERDMAFLQRDTAIAERNNAIMERDSALTALQYRENSMVta 93 9*****9889999955424457888.....****************************************************************999* PP GAGA_bind 93 .....salpvgvqvlsgtksidslqqlse......pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvk 179 sa+p+g+q+++g+k++++ +++++ pql+++a+e+re+e ++ lp++ a ++ e++k+k+++r +pk++++++++k+++k+++kvk AT5G42520.2 94 paanmSACPPGCQISRGVKHLHHPHMHHHhqqhhiPQLTENAYETREMEPNDGLPTSPPAGSTLESAKPKRGKR-VNPKATTQTAANKRGPKNQRKVK 190 ***999*****************99976679999************************************7766.5799******************* PP GAGA_bind 180 kesad.er.......................skaekksidl.vlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrg 252 kes+d + sk+++ks+++ +ln+v +De+t+P+PvCsCtG+lrqCYkWGnGGWqS+CCttt+S+yPLP+ +++r+ AT5G42520.2 191 KESEDdLNkimfvktthdytdedsskhiligSKSDWKSQEMvGLNQVVYDETTMPPPVCSCTGVLRQCYKWGNGGWQSSCCTTTLSMYPLPALPNKRH 288 ***985448********************************88******************************************************* PP GAGA_bind 253 aRiagrKmSqgafkklLekLaaeG.ydlsnpvDLkdhWAkHGtnkfvtir 301 aR++grKmS++af+klL++LaaeG +dlsnpvDLkdhWAkHGtn+++ti+ AT5G42520.2 289 ARVGGRKMSGSAFNKLLSRLAAEGhHDLSNPVDLKDHWAKHGTNRYITIK 338 ************************88***********************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01226 | 1.0E-180 | 1 | 338 | IPR010409 | GAGA-binding transcriptional activator |
Pfam | PF06217 | 2.0E-101 | 1 | 338 | IPR010409 | GAGA-binding transcriptional activator |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Plant Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PO Term | PO Category | PO Description | ||||
PO:0000013 | anatomy | cauline leaf | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0000230 | anatomy | inflorescence meristem | ||||
PO:0000293 | anatomy | guard cell | ||||
PO:0008019 | anatomy | leaf lamina base | ||||
PO:0009005 | anatomy | root | ||||
PO:0009006 | anatomy | shoot system | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009010 | anatomy | seed | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009029 | anatomy | stamen | ||||
PO:0009030 | anatomy | carpel | ||||
PO:0009031 | anatomy | sepal | ||||
PO:0009032 | anatomy | petal | ||||
PO:0009046 | anatomy | flower | ||||
PO:0009047 | anatomy | stem | ||||
PO:0009052 | anatomy | flower pedicel | ||||
PO:0020030 | anatomy | cotyledon | ||||
PO:0020038 | anatomy | petiole | ||||
PO:0020100 | anatomy | hypocotyl | ||||
PO:0020137 | anatomy | leaf apex | ||||
PO:0025022 | anatomy | collective leaf structure | ||||
PO:0025281 | anatomy | pollen | ||||
PO:0001054 | developmental stage | vascular leaf senescent stage | ||||
PO:0001078 | developmental stage | plant embryo cotyledonary stage | ||||
PO:0001081 | developmental stage | mature plant embryo stage | ||||
PO:0001185 | developmental stage | plant embryo globular stage | ||||
PO:0004507 | developmental stage | plant embryo bilateral stage | ||||
PO:0007064 | developmental stage | LP.12 twelve leaves visible stage | ||||
PO:0007095 | developmental stage | LP.08 eight leaves visible stage | ||||
PO:0007098 | developmental stage | LP.02 two leaves visible stage | ||||
PO:0007103 | developmental stage | LP.10 ten leaves visible stage | ||||
PO:0007115 | developmental stage | LP.04 four leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage | ||||
PO:0007616 | developmental stage | flowering stage |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 338 aa Download sequence Send to blast |
MDDGGHRENG RHKAAVQGQH QPSMKQVMSI IAERDAAIQE RNLAISEKKA AVAERDMAFL 60 QRDTAIAERN NAIMERDSAL TALQYRENSM VTAPAANMSA CPPGCQISRG VKHLHHPHMH 120 HHHQQHHIPQ LTENAYETRE MEPNDGLPTS PPAGSTLESA KPKRGKRVNP KATTQTAANK 180 RGPKNQRKVK KESEDDLNKI MFVKTTHDYT DEDSSKHILI GSKSDWKSQE MVGLNQVVYD 240 ETTMPPPVCS CTGVLRQCYK WGNGGWQSSC CTTTLSMYPL PALPNKRHAR VGGRKMSGSA 300 FNKLLSRLAA EGHHDLSNPV DLKDHWAKHG TNRYITIK |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
At.30165 | 0.0 | cell culture| flower| leaf |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | E-value | ||||
GEO | 145358761 | 0.0 | ||||
Genevisible | 249199_at | 0.0 | ||||
Expression Atlas | AT5G42520 | - | ||||
AtGenExpress | AT5G42520 | - | ||||
ATTED-II | AT5G42520 | - |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in sepal vasculature, in young rosette, in the lateral and tip of primary roots, and in ovule at the exception of the outer integument. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:21435046}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
Function -- GeneRIF ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00540 | DAP | 27203113 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | AT5G42520.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Interaction ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Intact With | |||||
BioGRID | AT5G42520 |
Phenotype -- Mutation ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
T-DNA Express | AT5G42520 |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK221752 | 0.0 | AK221752.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL21-54-A10. | |||
GenBank | AK227246 | 0.0 | AK227246.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL11-01-O04. | |||
GenBank | BT024874 | 0.0 | BT024874.1 Arabidopsis thaliana At5g42520 mRNA, complete cds. | |||
GenBank | EF123108 | 0.0 | EF123108.1 Arabidopsis thaliana GAGA-binding transcriptional activator (BBR/BPC6) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_001078690.1 | 0.0 | basic pentacysteine 6 | ||||
Swissprot | Q8L999 | 0.0 | BPC6_ARATH; Protein BASIC PENTACYSTEINE6 | ||||
TrEMBL | A0A178UIB6 | 0.0 | A0A178UIB6_ARATH; BPC6 | ||||
STRING | AT5G42520.1 | 0.0 | (Arabidopsis thaliana) |
Link Out ? help Back to Top | |
---|---|
Phytozome | AT5G42520.2 |
Entrez Gene | 834259 |
iHOP | AT5G42520 |
wikigenes | AT5G42520 |