PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019171935.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB_related

Protein Properties

Length: 695aa MW: 76726.3 Da PI: 9.5069

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019171935.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22.5	2.7e-07	587	636	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 r +++ E e lv+av+qlG+g+W+ + + +Rt ++k++w ++ XP_019171935.1 587 RRPFSVAEVEALVEAVEQLGTGRWRDVKMRAFdnaDHRTYVDLKDKWKTL 636 6789999******************976666899***********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 695 aa Download sequence
MVMKKRLEYG FDGYRFPAVP RAPRSSRRRH TGNVDDKQIC AFELLAAVAG KLLLESESSA 60 SSNAAEGKDG PAIQRDVTEE LGNFQEGKAL KPECLDRGSC VESAILPKGA IQEQKIKHGN 120 GGSSYSENSC VSESTFTEFS GKVYPGVKLE SVKNLDAEGN FNSEVEGRPS NLGDLRSVNI 180 NNATQKQQLA DDGMQTGDIT MAGGCSVKDP IKISLTTTNK NTLNNSDCSV QLPLYRDPVP 240 SASFAKHRRN DVKLGIRDDD ENSFRCFKRS TKIRAFRHRS HNGYRRIRKL LTSRRWQVAP 300 GLKECEFFNS YKAMRPYGNR KRTYAQQRRH IEKAPKRRKL CSRSFAIAYD QEVSSESVSN 360 LPEKQSNGDN YGSALIAHRG IGTTASVKGL QNPKDPNVKF SIKSFRVPEL YIEVPETTTV 420 GSLKKTVMDA VTSILCGSLR VGVVLHGKKV RDDNRTLQQA GISHNGDLDA LGFTLEPNLS 480 QVSSSLPQKD PPAAAEKELS GNPASPNLDL ALLAIPPHPS PEFKLDKHDD ESNHESLEGP 540 TDASRNVVGA ESQALVAVER TNVEPLAVVV PMNQKSRRSE LSQRRTRRPF SVAEVEALVE 600 AVEQLGTGRW RDVKMRAFDN ADHRTYVDLK DKWKTLVHTA SIAPQQRRGE PVPQELLDRV 660 LAAHSFWSLQ QAKQNGKAHT EAVTIGDAPP QLLEA

Sequence ? help Back to Top

Protein Sequence Length: 695 aa Download sequence

MVMKKRLEYG FDGYRFPAVP RAPRSSRRRH TGNVDDKQIC AFELLAAVAG KLLLESESSA  60
SSNAAEGKDG PAIQRDVTEE LGNFQEGKAL KPECLDRGSC VESAILPKGA IQEQKIKHGN  120
GGSSYSENSC VSESTFTEFS GKVYPGVKLE SVKNLDAEGN FNSEVEGRPS NLGDLRSVNI  180
NNATQKQQLA DDGMQTGDIT MAGGCSVKDP IKISLTTTNK NTLNNSDCSV QLPLYRDPVP  240
SASFAKHRRN DVKLGIRDDD ENSFRCFKRS TKIRAFRHRS HNGYRRIRKL LTSRRWQVAP  300
GLKECEFFNS YKAMRPYGNR KRTYAQQRRH IEKAPKRRKL CSRSFAIAYD QEVSSESVSN  360
LPEKQSNGDN YGSALIAHRG IGTTASVKGL QNPKDPNVKF SIKSFRVPEL YIEVPETTTV  420
GSLKKTVMDA VTSILCGSLR VGVVLHGKKV RDDNRTLQQA GISHNGDLDA LGFTLEPNLS  480
QVSSSLPQKD PPAAAEKELS GNPASPNLDL ALLAIPPHPS PEFKLDKHDD ESNHESLEGP  540
TDASRNVVGA ESQALVAVER TNVEPLAVVV PMNQKSRRSE LSQRRTRRPF SVAEVEALVE  600
AVEQLGTGRW RDVKMRAFDN ADHRTYVDLK DKWKTLVHTA SIAPQQRRGE PVPQELLDRV  660
LAAHSFWSLQ QAKQNGKAHT EAVTIGDAPP QLLEA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	320	339	RKRTYAQQRRHIEKAPKRRK
2	333	339	KAPKRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07540.1	2e-86	MYB_related family protein