PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019171783.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C2H2

Protein Properties

Length: 378aa MW: 42851.7 Da PI: 6.4658

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019171783.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.3	0.00051	79	101	3	23
ET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 3 Cp..dCgksFsrksnLkrHirtH 23 C+ Cgk+F + L++H H XP_019171783.1 79 CSyeGCGKTFIDAGALRKHSHIH 101 77779**************7766 PP
2	zf-C2H2	15	7.2e-05	106	130	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y C+ +Cgk F ++s LkrH H XP_019171783.1 106 YICHyeNCGKKFLDSSKLKRHFLIH 130 89*******************8877 PP
3	zf-C2H2	23.6	1.3e-07	136	160	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ++Cp Cgk Fs nLk+H+rtH XP_019171783.1 136 FVCPveGCGKAFSLDFNLKSHMRTH 160 89**********************9 PP
4	zf-C2H2	17	1.7e-05	166	191	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 + Cp Cgk++ + + Lk+Hi+t H XP_019171783.1 166 HICPfpECGKRYAHEYKLKNHISTtH 191 679999*****************999 PP
5	zf-C2H2	16.3	2.9e-05	229	254	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 y+Cp C+k + + + L+ H+r+ H XP_019171783.1 229 YVCPyeGCDKAYIHEYKLNLHLRKeH 254 99**********************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 378 aa Download sequence
MEAQTFHNLF DRRPIAKSRA PATKWFKEWV PQDVVATGGK CLLLKWVNEA TLNALKEKPI 60 EPEIPEAEPE PATEVLFLCS YEGCGKTFID AGALRKHSHI HGERQYICHY ENCGKKFLDS 120 SKLKRHFLIH TGERAFVCPV EGCGKAFSLD FNLKSHMRTH SQENYHICPF PECGKRYAHE 180 YKLKNHISTT HQKNGTPEVA KYVQHIEKPT KAPKSSGGAY ASASSDRPYV CPYEGCDKAY 240 IHEYKLNLHL RKEHPGHFPD ENAKNAHPPA SAAVENEMDE ESDQEAYAGK RGNGKAQKQS 300 SRPKPNLKLP PAKVTQRKGS SASPANLNVV KKPWPIKEDI YEDEEDSEET EEERDDVGDG 360 WRYGGNNEDD DEETEYED

Sequence ? help Back to Top

Protein Sequence Length: 378 aa Download sequence

MEAQTFHNLF DRRPIAKSRA PATKWFKEWV PQDVVATGGK CLLLKWVNEA TLNALKEKPI  60
EPEIPEAEPE PATEVLFLCS YEGCGKTFID AGALRKHSHI HGERQYICHY ENCGKKFLDS  120
SKLKRHFLIH TGERAFVCPV EGCGKAFSLD FNLKSHMRTH SQENYHICPF PECGKRYAHE  180
YKLKNHISTT HQKNGTPEVA KYVQHIEKPT KAPKSSGGAY ASASSDRPYV CPYEGCDKAY  240
IHEYKLNLHL RKEHPGHFPD ENAKNAHPPA SAAVENEMDE ESDQEAYAGK RGNGKAQKQS  300
SRPKPNLKLP PAKVTQRKGS SASPANLNVV KKPWPIKEDI YEDEEDSEET EEERDDVGDG  360
WRYGGNNEDD DEETEYED

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G06634.1	1e-141	C2H2 family protein