PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019171499.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

M-type_MADS

Protein Properties

Length: 406aa MW: 45817.1 Da PI: 5.521

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019171499.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	45.2	1.2e-14	14	52	6	44
HHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 6 ksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 + r+ tf kR++gi+KK E +LCd+++++ii++++ XP_019171499.1 14 EKARNLTFKKRKEGIMKKMREFTTLCDVNACMIIYGPNS 52 66799*******************************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 406 aa Download sequence
MGRAKLNLEL IPKEKARNLT FKKRKEGIMK KMREFTTLCD VNACMIIYGP NSQSSEPAIW 60 PNDRSEVERM IELYKEKVAD NSTRSYGISN FFMDRKKKLE EEVRKLKQKN LEAKYPTNLE 120 FMDRMSKPEL ENFVRFLDGK LEAAAARMEM MNEISNNNGE LQQQSQAMQI FPGYNNQDYY 180 IDPMQIDNLG YVTNPLHHQH VVYNSPNVIL DDDQEKNYGL LGYANPNPTP GPGRMMIPPE 240 YMHFTGGASS SSSAGAGPGG FIIYNNDSFP AGYRQQQVNL YEPMMSNVMA QYSIDRTTMQ 300 LTMVPPPPPY MGGDLPPLPP CYLEMNEVKC TLPALPAGGV NLPPQISPSS YYLEEKENNN 360 NYLPPPAGGS GLPQLPPPRS CMEDKEVASS SSITHYQVTN QITRFS

Sequence ? help Back to Top

Protein Sequence Length: 406 aa Download sequence

MGRAKLNLEL IPKEKARNLT FKKRKEGIMK KMREFTTLCD VNACMIIYGP NSQSSEPAIW  60
PNDRSEVERM IELYKEKVAD NSTRSYGISN FFMDRKKKLE EEVRKLKQKN LEAKYPTNLE  120
FMDRMSKPEL ENFVRFLDGK LEAAAARMEM MNEISNNNGE LQQQSQAMQI FPGYNNQDYY  180
IDPMQIDNLG YVTNPLHHQH VVYNSPNVIL DDDQEKNYGL LGYANPNPTP GPGRMMIPPE  240
YMHFTGGASS SSSAGAGPGG FIIYNNDSFP AGYRQQQVNL YEPMMSNVMA QYSIDRTTMQ  300
LTMVPPPPPY MGGDLPPLPP CYLEMNEVKC TLPALPAGGV NLPPQISPSS YYLEEKENNN  360
NYLPPPAGGS GLPQLPPPRS CMEDKEVASS SSITHYQVTN QITRFS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58890.1	1e-19	M-type_MADS family protein