PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019171153.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 615aa MW: 68101.9 Da PI: 4.7139

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019171153.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	44.2	3.3e-14	431	473	7	54
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ErrRR++iN++f L +l+P++ +K +K++iL +++eY+k+L XP_019171153.1 431 VSERRRREKINERFMILSSLIPSS-----GKADKVSILDETIEYLKDL 473 57*******************9.....9**************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 615 aa Download sequence
MARGEGFAEN LREKLALAIR SIEWSYAIFW TISSAQPGVL EWGDGYYNGD IKTRKTVQAA 60 ETSTDQLGLQ RTEHLRELYG SLLAGETNLH AKIPSAALSP EDLTDTEWYF LVCMSFVFNI 120 GQGLPGKALA KNQTVWLCNA PQADGRVFTR TLLAKSACIQ TVVCFPHLGG VIELGVTELV 180 KEDRGLVQHL KTSYLDIPCP IVPGVPNYIS TDDGNDRDIV NSKPNQDTLE ASPKEENIDS 240 PDNSSNGLEA DEFKVKGATA EASQPPNCQI VEDDISNCIH NSTNSSDCIS QNYENPEEKV 300 SDFLNDEEMV EHSPPENQEC NQESLVPLDN RGQGHDVHYQ SILSSVLKSS HQFILGPYFR 360 NGNRESSFGG WKKEISTNIQ TLRIETSQRL LKKVLSGVAR MVCIPDTRKE GDGKNDPRRL 420 EADESDRSRV VSERRRREKI NERFMILSSL IPSSGKADKV SILDETIEYL KDLKTRVWEA 480 ESQKEGFELN ARMGRNCKDC DDAERTSDNC GTNIIDNNKK PSSKKRKASE TEGASKSIAK 540 NGSARDVAVS VTDEDVTIEI GCQWSEGVLI KIIQALNNLH LDCETIQSSN GDDGTLSVSV 600 KYEGVKINVT ITSLD

Sequence ? help Back to Top

Protein Sequence Length: 615 aa Download sequence

MARGEGFAEN LREKLALAIR SIEWSYAIFW TISSAQPGVL EWGDGYYNGD IKTRKTVQAA  60
ETSTDQLGLQ RTEHLRELYG SLLAGETNLH AKIPSAALSP EDLTDTEWYF LVCMSFVFNI  120
GQGLPGKALA KNQTVWLCNA PQADGRVFTR TLLAKSACIQ TVVCFPHLGG VIELGVTELV  180
KEDRGLVQHL KTSYLDIPCP IVPGVPNYIS TDDGNDRDIV NSKPNQDTLE ASPKEENIDS  240
PDNSSNGLEA DEFKVKGATA EASQPPNCQI VEDDISNCIH NSTNSSDCIS QNYENPEEKV  300
SDFLNDEEMV EHSPPENQEC NQESLVPLDN RGQGHDVHYQ SILSSVLKSS HQFILGPYFR  360
NGNRESSFGG WKKEISTNIQ TLRIETSQRL LKKVLSGVAR MVCIPDTRKE GDGKNDPRRL  420
EADESDRSRV VSERRRREKI NERFMILSSL IPSSGKADKV SILDETIEYL KDLKTRVWEA  480
ESQKEGFELN ARMGRNCKDC DDAERTSDNC GTNIIDNNKK PSSKKRKASE TEGASKSIAK  540
NGSARDVAVS VTDEDVTIEI GCQWSEGVLI KIIQALNNLH LDCETIQSSN GDDGTLSVSV  600
KYEGVKINVT ITSLD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	433	438	ERRRRE
2	434	439	RRRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41315.1	1e-155	bHLH family protein