PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019170794.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 459aa MW: 47712 Da PI: 6.3411

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019170794.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.9	6.4e-12	259	304	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq XP_019170794.1 259 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 304 99*********************8.....6****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 459 aa Download sequence
MQETNSLQDL HNGGGGGGVN GGHQQQQQHM SMSNFDLPPT HDDFLEQILS AASPWPDLIS 60 KSQPPWEAQH HSLPMPPLSN LNAAADDQTY HFDDQSSHSS ALLASKLQQY HINGSDGGAS 120 AAAAAKALML QQQLLLSRAL TGTGLRSPTG AAGGNGLLGI PLSLTGGDQN EANDNKFEAL 180 FNGFTGSLGQ TSSQPHHFHH PQGGEMQAQS FGAPSAAPPP PMNQGLASTG SASTGGGAAP 240 AQPKQQRVRA RRGQATDPHS IAERLRRERI AERMKALQEL VPNANKTDKA SMLDEIIDYV 300 KFLQLQVKVL SMSRLGGAAA VAPLVADMSS EGGDCIQGNG GRSSNGTLQA ASSSNNDSMT 360 MTEQQVAKLM EEDMGTAMQY LQGKGLCLMP ISLATAISTS TCHSTRNPIA NTLLRNAADA 420 GGGPSSPSMS VLTVQSAATT MGNATPDPSV KDAASVSKP

Sequence ? help Back to Top

Protein Sequence Length: 459 aa Download sequence

MQETNSLQDL HNGGGGGGVN GGHQQQQQHM SMSNFDLPPT HDDFLEQILS AASPWPDLIS  60
KSQPPWEAQH HSLPMPPLSN LNAAADDQTY HFDDQSSHSS ALLASKLQQY HINGSDGGAS  120
AAAAAKALML QQQLLLSRAL TGTGLRSPTG AAGGNGLLGI PLSLTGGDQN EANDNKFEAL  180
FNGFTGSLGQ TSSQPHHFHH PQGGEMQAQS FGAPSAAPPP PMNQGLASTG SASTGGGAAP  240
AQPKQQRVRA RRGQATDPHS IAERLRRERI AERMKALQEL VPNANKTDKA SMLDEIIDYV  300
KFLQLQVKVL SMSRLGGAAA VAPLVADMSS EGGDCIQGNG GRSSNGTLQA ASSSNNDSMT  360
MTEQQVAKLM EEDMGTAMQY LQGKGLCLMP ISLATAISTS TCHSTRNPIA NTLLRNAADA  420
GGGPSSPSMS VLTVQSAATT MGNATPDPSV KDAASVSKP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	264	269	RLRRER

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24260.1	4e-69	bHLH family protein