PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019170793.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 461aa MW: 47896.3 Da PI: 6.3411

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019170793.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.9	6.4e-12	261	306	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq XP_019170793.1 261 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 306 99*********************8.....6****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 461 aa Download sequence
MQETNSLQDL HNGGGGGGVN GGHQQQQQHM SMSNFDLPPT HDDFLEQILS AASPWPDLIS 60 KSQPPWEAQH HSLPMPPLSN LNAAADDQTY HFDDQSSHSS ALLASKLQQY HINGSDGGAS 120 AAAAAKALML QQQLLLSRAL TGTGLRSPTG AAGGNGLLGI PLSLTGGDQN EAIANDNKFE 180 ALFNGFTGSL GQTSSQPHHF HHPQGGEMQA QSFGAPSAAP PPPMNQGLAS TGSASTGGGA 240 APAQPKQQRV RARRGQATDP HSIAERLRRE RIAERMKALQ ELVPNANKTD KASMLDEIID 300 YVKFLQLQVK VLSMSRLGGA AAVAPLVADM SSEGGDCIQG NGGRSSNGTL QAASSSNNDS 360 MTMTEQQVAK LMEEDMGTAM QYLQGKGLCL MPISLATAIS TSTCHSTRNP IANTLLRNAA 420 DAGGGPSSPS MSVLTVQSAA TTMGNATPDP SVKDAASVSK P

Sequence ? help Back to Top

Protein Sequence Length: 461 aa Download sequence

MQETNSLQDL HNGGGGGGVN GGHQQQQQHM SMSNFDLPPT HDDFLEQILS AASPWPDLIS  60
KSQPPWEAQH HSLPMPPLSN LNAAADDQTY HFDDQSSHSS ALLASKLQQY HINGSDGGAS  120
AAAAAKALML QQQLLLSRAL TGTGLRSPTG AAGGNGLLGI PLSLTGGDQN EAIANDNKFE  180
ALFNGFTGSL GQTSSQPHHF HHPQGGEMQA QSFGAPSAAP PPPMNQGLAS TGSASTGGGA  240
APAQPKQQRV RARRGQATDP HSIAERLRRE RIAERMKALQ ELVPNANKTD KASMLDEIID  300
YVKFLQLQVK VLSMSRLGGA AAVAPLVADM SSEGGDCIQG NGGRSSNGTL QAASSSNNDS  360
MTMTEQQVAK LMEEDMGTAM QYLQGKGLCL MPISLATAIS TSTCHSTRNP IANTLLRNAA  420
DAGGGPSSPS MSVLTVQSAA TTMGNATPDP SVKDAASVSK P

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	266	271	RLRRER

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24260.1	4e-69	bHLH family protein