PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019170239.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

ARF

Protein Properties

Length: 664aa MW: 72936.2 Da PI: 8.3932

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019170239.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	78.2	8.6e-25	154	255	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+lt sd++++g +++p++ ae++ + +++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+F ++ + XP_019170239.1 154 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyK-QQRPSQELVARDLHGITWKFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRS--GD 245 99**************************963.3445679*********************************************54..68 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 +el+++++r+ XP_019170239.1 246 GELRLGIRRA 255 889999986 PP
2	Auxin_resp	106.7	2.6e-35	282	363	1	82
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 +++a+st+ vF+v+YnPr s s+Fvv+++k++++l +++++G Rfk++feted++err++G+v+gv d+dpvrWp+SkWrsL XP_019170239.1 282 VVNATSTRGVFNVCYNPRDSLSKFVVPYRKFSRSLLHPFAPGVRFKLHFETEDAAERRYTGLVIGVGDVDPVRWPGSKWRSL 363 68999***************************************************************************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 664 aa Download sequence
MMMMSGLIDL NTVNNGDVDG EETAAATSPD NSDLTESSPP PAAGLLCMEL WHACAGPLIS 60 LPKKGSAVVY LAQGHLEHLS DYPAVAYNLP PHVFCRVVDV KLHAEVATDE VYAQVSLVPD 120 NLIEQKWRNG EVEVDNEEVD TEGDGKSRTP PHMFCKTLTA SDTSTHGGFS VPRRAAEDCF 180 PPLDYKQQRP SQELVARDLH GITWKFRHIY RGQPRRHLLT TGWSAFVNKK KLVSGDAVLF 240 LRSGDGELRL GIRRAAQAKF GSPSSALGPF SQRLNVSGIL DVVNATSTRG VFNVCYNPRD 300 SLSKFVVPYR KFSRSLLHPF APGVRFKLHF ETEDAAERRY TGLVIGVGDV DPVRWPGSKW 360 RSLLVRWDDP DDTRHNRVSP WEIEPTGTVT GPINVVVPAA KRTRIGEEDF RVHGDRTVVL 420 DIRNPSRLPV LQGQEVFQVN KPYDGSDPQR AVYFPGFDSS GVSTRGRNVR ALLGDYAGKS 480 KESIGFAESC RFNKVLQGQE TYLNSPPYRR GGIATNHLQQ PHRSGIIVGI QVPSHSTRWS 540 STPIPNHHPP MQQQQPSSPL VSPPSVLMFQ QATSPAPATF HKQSGFSHLL GPQSSCRIFG 600 FPLSEGRRSA ASGEERDSSH GETTSTTPLS GNEARVLLKP QAIPSAMGSS YPKASREVLL 660 DIAL

Sequence ? help Back to Top

Protein Sequence Length: 664 aa Download sequence

MMMMSGLIDL NTVNNGDVDG EETAAATSPD NSDLTESSPP PAAGLLCMEL WHACAGPLIS  60
LPKKGSAVVY LAQGHLEHLS DYPAVAYNLP PHVFCRVVDV KLHAEVATDE VYAQVSLVPD  120
NLIEQKWRNG EVEVDNEEVD TEGDGKSRTP PHMFCKTLTA SDTSTHGGFS VPRRAAEDCF  180
PPLDYKQQRP SQELVARDLH GITWKFRHIY RGQPRRHLLT TGWSAFVNKK KLVSGDAVLF  240
LRSGDGELRL GIRRAAQAKF GSPSSALGPF SQRLNVSGIL DVVNATSTRG VFNVCYNPRD  300
SLSKFVVPYR KFSRSLLHPF APGVRFKLHF ETEDAAERRY TGLVIGVGDV DPVRWPGSKW  360
RSLLVRWDDP DDTRHNRVSP WEIEPTGTVT GPINVVVPAA KRTRIGEEDF RVHGDRTVVL  420
DIRNPSRLPV LQGQEVFQVN KPYDGSDPQR AVYFPGFDSS GVSTRGRNVR ALLGDYAGKS  480
KESIGFAESC RFNKVLQGQE TYLNSPPYRR GGIATNHLQQ PHRSGIIVGI QVPSHSTRWS  540
STPIPNHHPP MQQQQPSSPL VSPPSVLMFQ QATSPAPATF HKQSGFSHLL GPQSSCRIFG  600
FPLSEGRRSA ASGEERDSSH GETTSTTPLS GNEARVLLKP QAIPSAMGSS YPKASREVLL  660
DIAL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33860.1	1e-164	ARF family protein