PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019169279.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

LSD

Protein Properties

Length: 395aa MW: 43333.4 Da PI: 4.4187

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019169279.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	38.6	1.7e-12	306	330	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg Cr lLsYPrG++ V+C+ C+tV XP_019169279.1 306 CGTCRQLLSYPRGSKWVQCSACQTV 330 ************************9 PP
2	zf-LSD1	46.1	8.2e-15	344	368	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC +lL+YP+GApsV+C++C++V XP_019169279.1 344 CGGCTVLLMYPYGAPSVKCSSCHFV 368 ***********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 395 aa Download sequence
MGAEEGMESN PKTFVEEEEE DEDDDEGPPP GFDSIAIRSQ LENMDVEDED EDDDDDDGPP 60 PGFAEPHQPE TPPLSATSHS DTQRLRNQGL SDVEIGKKQN ETKYEEDRPP LGSQSTSPKQ 120 PHQSMTSSEL VSDTQMRSIE EDDDGPPPGW QWNPQQQPLP ESIPPPGLQS APSSSIQTGI 180 IQEDDDGPPP GWQLISSQQR QPQTIPSLLP QSVAPSDIEK ENKGGNKGEI EWRQSGSESS 240 PMPEYSSTPT RHSSVASSDI EMATKQQSIK NEEKKLRTDR GPSQRIISRL PPAALQISSE 300 VGQLVCGTCR QLLSYPRGSK WVQCSACQTV NLALEGHQIG QVKCGGCTVL LMYPYGAPSV 360 KCSSCHFVTR IGAHNRRPHL AAQQARRQRP SHQAH

Sequence ? help Back to Top

Protein Sequence Length: 395 aa Download sequence

MGAEEGMESN PKTFVEEEEE DEDDDEGPPP GFDSIAIRSQ LENMDVEDED EDDDDDDGPP  60
PGFAEPHQPE TPPLSATSHS DTQRLRNQGL SDVEIGKKQN ETKYEEDRPP LGSQSTSPKQ  120
PHQSMTSSEL VSDTQMRSIE EDDDGPPPGW QWNPQQQPLP ESIPPPGLQS APSSSIQTGI  180
IQEDDDGPPP GWQLISSQQR QPQTIPSLLP QSVAPSDIEK ENKGGNKGEI EWRQSGSESS  240
PMPEYSSTPT RHSSVASSDI EMATKQQSIK NEEKKLRTDR GPSQRIISRL PPAALQISSE  300
VGQLVCGTCR QLLSYPRGSK WVQCSACQTV NLALEGHQIG QVKCGGCTVL LMYPYGAPSV  360
KCSSCHFVTR IGAHNRRPHL AAQQARRQRP SHQAH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21610.1	4e-34	LSD family protein