PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019169140.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C2H2
Protein Properties Length: 276aa    MW: 29517.1 Da    PI: 7.8065
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019169140.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.00012163185123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++C+ksF++   L  H r+H
  XP_019169140.1 163 HECNICHKSFPSGQALGGHKRRH 185
                     78*******************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    
MALEAMKSSA VVTPPAPCVE VDDVHGLKKK RTKRPRGDES PALPPPTEEE RYLALCLIML  60
ARGEDPSRRQ RDAPAEAKVV SKESETVSLP PPPPPAAAAA QEVPHQEQLY KCSVCNKCFH  120
SYQALGGHKA SHRKLASASD DNNNHPSTSN STAAVVNPIG RAHECNICHK SFPSGQALGG  180
HKRRHYEGNL GGAPNRDAGS APSGSALTSS EGGVSSHAPR PFDLNLLPST ELQLGLSVDC  240
SIKSQLSGDQ EVESPMPAKK PRLSFPFDWD FRPNNS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12734LKKKRTKR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.18e-45C2H2 family protein