PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019168899.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

LBD

Protein Properties

Length: 290aa MW: 32561.8 Da PI: 9.7546

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019168899.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	94.7	1e-29	11	110	1	99
DUF260 1 aCaaCkvlrrkCakd.CvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 aCaaCk++r+kC + Cvl ++fpa+ +k+f++vh +FG +n++k++k l++ ++++a++sl++eA+++ +dP +G +g +++l+++l lk+++ XP_019168899.1 11 ACAACKHQRKKCRGEaCVLWRHFPASMMKEFQAVHGVFGIANISKIIKGLDPVQQDIAVKSLLWEAKVWKEDPAQGPLGRFKRLERELFFLKNQI 105 7*********9766****************************************************************************9 PP DUF260 95 allke 99 ++l++ XP_019168899.1 106 NMLQS 110 99876 PP

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence
MTVGEEGNRP ACAACKHQRK KCRGEACVLW RHFPASMMKE FQAVHGVFGI ANISKIIKGL 60 DPVQQDIAVK SLLWEAKVWK EDPAQGPLGR FKRLERELFF LKNQINMLQS RPLITAPPLP 120 WPETYPSHGG VGNFSFHPNY TGQHRMSNGH GHEFQQIIQP NFGRTGFNHQ NNNMQTQNAR 180 NVMNPRPLQQ HLPPPYHNSF GHNKENALVP YANNVGISGQ DRRSVIHVGN VVRPSRLPAG 240 PAVPSSRSIV TVKQGDEDET GDNEARELVA ALYYDHQLLN STNQNYVQGT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50510.1	1e-23	LBD family protein