PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT3G50510.1 | ||||||||
Common Name | ASL25, LBD28, T20E23.110 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | LBD | ||||||||
Protein Properties | Length: 198aa MW: 22464.5 Da PI: 6.0079 | ||||||||
Description | LOB domain-containing protein 28 | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 122.7 | 2e-38 | 12 | 111 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk+lrrkC++dCv+apyfp+++ ++++vhk+FGas+v l+++l++ +re am++l++eA+++a+dPv+G++g+i +l +q++ l+++la +k AT3G50510.1 12 PCAACKHLRRKCTEDCVFAPYFPSTKLDNYEAVHKVFGASHVATLINSLHPCQREFAMDTLAWEAQVQANDPVNGCLGIIYNLLSQIKDLEEQLAIVK 109 7***********************************************************************************************99 PP DUF260 99 ee 100 +e AT3G50510.1 110 NE 111 87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 27.522 | 11 | 112 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.1E-36 | 12 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008150 | Biological Process | biological_process |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence Send to blast |
MMFHQMDKIS TPCAACKHLR RKCTEDCVFA PYFPSTKLDN YEAVHKVFGA SHVATLINSL 60 HPCQREFAMD TLAWEAQVQA NDPVNGCLGI IYNLLSQIKD LEEQLAIVKN ELASYCIVPT 120 FVPPPSMTNL EMHNNPMMIP EHTPNNGGCL TGQQLYNEAQ RFASTQSAQM QETQMQHDEE 180 SYRDKSSYQK FGPCFNLH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 5e-31 | 10 | 123 | 9 | 127 | LOB family transfactor Ramosa2.1 |
5ly0_B | 5e-31 | 10 | 123 | 9 | 127 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 240255577 | 0.0 | ||||
Expression Atlas | AT3G50510 | - | ||||
AtGenExpress | AT3G50510 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT3G50510.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT3G50510 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB473858 | 0.0 | AB473858.1 Arabidopsis thaliana ASL25 mRNA for ASYMMETRIC LEAVES2-like 25 protein, complete cds. | |||
GenBank | AL133363 | 0.0 | AL133363.1 Arabidopsis thaliana DNA chromosome 3, BAC clone T20E23. | |||
GenBank | CP002686 | 0.0 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001319720.1 | 1e-150 | LOB domain-containing protein 28 | ||||
Refseq | NP_190620.1 | 1e-150 | LOB domain-containing protein 28 | ||||
Swissprot | Q9SCS4 | 1e-151 | LBD28_ARATH; LOB domain-containing protein 28 | ||||
TrEMBL | A0A178VFQ1 | 1e-146 | A0A178VFQ1_ARATH; Uncharacterized protein | ||||
STRING | AT3G50510.1 | 1e-149 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM131 | 28 | 340 | Representative plant | OGRP60 | 16 | 318 |
Link Out ? help Back to Top | |
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Phytozome | AT3G50510.1 |
Entrez Gene | 824215 |
iHOP | AT3G50510 |
wikigenes | AT3G50510 |
Publications ? help Back to Top | |||
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