PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019168873.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

GRAS

Protein Properties

Length: 263aa MW: 30107 Da PI: 8.2172

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019168873.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	95.8	6.8e-30	179	254	76	153
GRAS 76 eelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg 153 + l++ f+e++ +lkf+h+taNqaIle + ++rvH+iDf+++qG+QW+aL+qaLa R +pp + +Tg+g+p+ g XP_019168873.1 179 DDLHM--HFYETCLYLKFAHFTANQAILETFTDCSRVHVIDFSLKQGMQWLALMQALAVRLTDPPPFWLTGIGPPQRG 254 33333..4******************************************************************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 263 aa Download sequence
MSLMRFNLVP LFLNFIPVTS YRKIGAIAQL DGRLQPDGEA SLALMASFEI RSKFLNSLKS 60 QSRMKRERDR PKVERSSMGK GKIWEEHPLD ARMDELLAVL GYKVKTSDMA DVAQKLEQLE 120 MVGKTGFPIF RLLRRISDDD LRVIPGDAIF GNTKDRNPQL DLILVVEKPQ YTLESSYTDD 180 LHMHFYETCL YLKFAHFTAN QAILETFTDC SRVHVIDFSL KQGMQWLALM QALAVRLTDP 240 PPFWLTGIGP PQRGMSSMWI EST

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01570.1	2e-33	GRAS family protein