PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019168870.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

GRF

Protein Properties

Length: 395aa MW: 43035.8 Da PI: 8.5567

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019168870.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	78.2	7.8e-25	136	179	1	44
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+ep+rCrRtDGKkWRCsr+vl+++k+CErH h++r rsrk++e XP_019168870.1 136 DPEPWRCRRTDGKKWRCSRDVLPDQKYCERHAHKNRPRSRKPVE 179 79***************************************987 PP
2	QLQ	49.2	1.6e-17	85	118	3	36
QLQ 3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 FTa+Q q++++Q l+yKy++a++PvPp+Ll +++ XP_019168870.1 85 FTASQRQEFERQSLIYKYMMASVPVPPQLLIPLP 118 ******************************9997 PP

Sequence ? help Back to Top
Protein Sequence Length: 395 aa Download sequence
MGSRERSGKL AGLGEHDDDS SSYRCTKKTT RLNRQFQFSP SETEGSCFGD GGNGTSAAPA 60 GGPIFFNSAA PLTGGSMGSE KAVVFTASQR QEFERQSLIY KYMMASVPVP PQLLIPLPKT 120 QSNKSGLDLK FPAGSDPEPW RCRRTDGKKW RCSRDVLPDQ KYCERHAHKN RPRSRKPVEI 180 QSHKNSPNHN NNYPVTVPSF QFPATASCDQ NRSNEWFARQ KQQFVLSPPP STLGYTIGNA 240 INMNTSSLYR PELSSNEQGF VNPNLFLEGH EARSHQVNSA FLSHNMAFLQ ANAGIVHPTQ 300 HFIDGLDNTD HNSLSCKSSD RKLPFCSFRL SVPGGGEDNH HQGLSVGMLN PESQSSSSIM 360 PGGPLGEALC LGTASNLPSP HGYSNSSGTS SCSLI

Sequence ? help Back to Top

Protein Sequence Length: 395 aa Download sequence

MGSRERSGKL AGLGEHDDDS SSYRCTKKTT RLNRQFQFSP SETEGSCFGD GGNGTSAAPA  60
GGPIFFNSAA PLTGGSMGSE KAVVFTASQR QEFERQSLIY KYMMASVPVP PQLLIPLPKT  120
QSNKSGLDLK FPAGSDPEPW RCRRTDGKKW RCSRDVLPDQ KYCERHAHKN RPRSRKPVEI  180
QSHKNSPNHN NNYPVTVPSF QFPATASCDQ NRSNEWFARQ KQQFVLSPPP STLGYTIGNA  240
INMNTSSLYR PELSSNEQGF VNPNLFLEGH EARSHQVNSA FLSHNMAFLQ ANAGIVHPTQ  300
HFIDGLDNTD HNSLSCKSSD RKLPFCSFRL SVPGGGEDNH HQGLSVGMLN PESQSSSSIM  360
PGGPLGEALC LGTASNLPSP HGYSNSSGTS SCSLI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37740.1	8e-28	GRF family protein