PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_019168806.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 210aa MW: 23500 Da PI: 9.5443 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 56.2 | 4.5e-18 | 16 | 58 | 3 | 45 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 i ++snr++tf kR++ + KKA ELSvLC++ v+ ++ s+ + XP_019168806.1 16 ITDDSNRKTTFKKRKKSLVKKARELSVLCGVTVCAVVCSPFRE 58 889***********************************98665 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence |
MAATPSASRK RILTYITDDS NRKTTFKKRK KSLVKKAREL SVLCGVTVCA VVCSPFREIE 60 TEVFPDEGGV REAYARFKGM TQVEQTRRKY SQETITEERY EKVKSKALKV STGNQEKEMT 120 EMMYQYLSGQ LMSLPAMNLV HLNDLAVVTQ RHLERITEKL AALGKEGDSV LMPPPPPRAP 180 ASMDMGGGMR NDEGNGMYVN TNNRPEGPAC |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 9 | 31 | RKRILTYITDDSNRKTTFKKRKK |
2 | 27 | 31 | KKRKK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 2e-22 | M-type_MADS family protein |