PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019168778.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

WRKY

Protein Properties

Length: 456aa MW: 48750.7 Da PI: 5.2396

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019168778.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	97.7	7.4e-31	224	282	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+ XP_019168778.1 224 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 282 699**********************998**************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 456 aa Download sequence
MCSQFQLHGM ENYQGDLADI VRGSGLAGNT AQEASPPAVP DTWQYPGSSG DNMAAAMNCY 60 SSSSDHHDFG DPFCHLRDPL MFQELAMPPP PPPSAAFFTC SDNDLDLVDT AAAAPETGTS 120 SSVFPPPKLV LDEEMKRPPA CNIFSRMLQI SPNSNLNPPA AGGGLACSEN IISASSSGNA 180 AGLQISSPRN TGSIKRRKSQ AKKVVCVPAP APANSRPSGE VVPSDLWAWR KYGQKPIKGS 240 PYPRGYYRCS SSKGCSARKQ VERSRTDPNM LVITYTSEHN HPWPTQRNAL AGSTRAQAAK 300 NAAAAATKSS ISQTPTPPTT NDTPPVKEET TTAAEDRDGD DNPHHVMQMD EFPGGFPQSY 360 KPALPSAGDN DDDVTTHHHH HPEDFFADLG EIESTDPLNL MFSQGFPSGQ EKKAAAAGIA 420 IDDAFNFYDW TTTTPTDNNN NSIQTLGKSD SGQRGL

Sequence ? help Back to Top

Protein Sequence Length: 456 aa Download sequence

MCSQFQLHGM ENYQGDLADI VRGSGLAGNT AQEASPPAVP DTWQYPGSSG DNMAAAMNCY  60
SSSSDHHDFG DPFCHLRDPL MFQELAMPPP PPPSAAFFTC SDNDLDLVDT AAAAPETGTS  120
SSVFPPPKLV LDEEMKRPPA CNIFSRMLQI SPNSNLNPPA AGGGLACSEN IISASSSGNA  180
AGLQISSPRN TGSIKRRKSQ AKKVVCVPAP APANSRPSGE VVPSDLWAWR KYGQKPIKGS  240
PYPRGYYRCS SSKGCSARKQ VERSRTDPNM LVITYTSEHN HPWPTQRNAL AGSTRAQAAK  300
NAAAAATKSS ISQTPTPPTT NDTPPVKEET TTAAEDRDGD DNPHHVMQMD EFPGGFPQSY  360
KPALPSAGDN DDDVTTHHHH HPEDFFADLG EIESTDPLNL MFSQGFPSGQ EKKAAAAGIA  420
IDDAFNFYDW TTTTPTDNNN NSIQTLGKSD SGQRGL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30650.1	2e-80	WRKY family protein