PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | AT1G30650.1 | ||||||||
Common Name | AR411, ATWRKY14, T5I8.10, WRKY14 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 430aa MW: 46802.5 Da PI: 5.227 | ||||||||
Description | WRKY DNA-binding protein 14 | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 98.5 | 4.2e-31 | 217 | 275 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs+fpr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+ AT1G30650.1 217 SDLWAWRKYGQKPIKGSPFPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 275 699************************998****************************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF038153 | 4.1E-287 | 1 | 430 | No hit | No description |
Gene3D | G3DSA:2.20.25.80 | 7.5E-31 | 210 | 277 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 32.879 | 211 | 277 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.4E-26 | 214 | 277 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.3E-38 | 216 | 276 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.5E-26 | 218 | 275 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PO Term | PO Category | PO Description | ||||
PO:0000026 | anatomy | primary root tip | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0003021 | anatomy | central root cap of primary root | ||||
PO:0003022 | anatomy | lateral root cap of primary root | ||||
PO:0009005 | anatomy | root | ||||
PO:0009010 | anatomy | seed | ||||
PO:0009046 | anatomy | flower | ||||
PO:0001078 | developmental stage | plant embryo cotyledonary stage | ||||
PO:0001081 | developmental stage | mature plant embryo stage | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 430 aa Download sequence Send to blast |
MCSVSELLDM ENFQGDLTDV VRGIGGHVLS PETPPSNIWP LPLSHPTPSP SDLNINPFGD 60 PFVSMDDPLL QELNSITNSG YFSTVGDNNN NIHNNNGFLV PKVFEEDHIK SQCSIFPRIR 120 ISHSNIIHDS SPCNSPAMSA HVVAAAAAAS PRGIINVDTN SPRNCLLVDG TTFSSQIQIS 180 SPRNLGLKRR KSQAKKVVCI PAPAAMNSRS SGEVVPSDLW AWRKYGQKPI KGSPFPRGYY 240 RCSSSKGCSA RKQVERSRTD PNMLVITYTS EHNHPWPIQR NALAGSTRSS TSSSSNPNPS 300 KPSTANVNSS SIGSQNTIYL PSSTTPPPTL SSSAIKDERG DDMELENVDD DDDNQIAPYR 360 PELHDHQHQP DDFFADLEEL EGDSLSMLLS HGCGGDGKDK TTASDGISNF FGWSGDNNYN 420 NYDDQDSRSL |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 1e-25 | 191 | 277 | 2 | 79 | Disease resistance protein RRS1 |
5w3x_D | 1e-25 | 191 | 277 | 2 | 79 | Disease resistance protein RRS1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
At.345 | 0.0 | root |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | E-value | ||||
GEO | 18397605 | 0.0 | ||||
Genevisible | 263225_at | 0.0 | ||||
Expression Atlas | AT1G30650 | - | ||||
AtGenExpress | AT1G30650 | - | ||||
ATTED-II | AT1G30650 | - |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
TAIR | member of WRKY Transcription Factor; Group II-e | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00171 | DAP | 27203113 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | AT1G30650.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Phenotype -- Mutation ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
T-DNA Express | AT1G30650 |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK228343 | 0.0 | AK228343.1 Arabidopsis thaliana mRNA for putative DNA-binding protein, complete cds, clone: RAFL14-76-G23. | |||
GenBank | BT006468 | 0.0 | BT006468.1 Arabidopsis thaliana At1g30650 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_564359.1 | 0.0 | WRKY DNA-binding protein 14 | ||||
Swissprot | Q9SA80 | 0.0 | WRK14_ARATH; Probable WRKY transcription factor 14 | ||||
TrEMBL | A0A384KXJ4 | 0.0 | A0A384KXJ4_ARATH; WRKY14 | ||||
TrEMBL | Q0WRG6 | 0.0 | Q0WRG6_ARATH; Putative DNA-binding protein | ||||
STRING | AT1G30650.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3085 | 28 | 65 | Representative plant | OGRP14 | 17 | 875 |
Link Out ? help Back to Top | |
---|---|
Phytozome | AT1G30650.1 |
Entrez Gene | 839945 |
iHOP | AT1G30650 |
wikigenes | AT1G30650 |