PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019166505.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GATA
Protein Properties Length: 326aa    MW: 35334.2 Da    PI: 7.9339
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019166505.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.32.5e-19224257134
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                     C++C +tkTp+WR+gp g+ktLCnaCG++yr+ +
  XP_019166505.1 224 CTHCEVTKTPQWREGPMGPKTLCNACGVRYRSGR 257
                     *******************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    
MSVVEAGYLD GIANGVNGCD IFPDLLNILD FPEESLEGDD SVGDWDASML QCLGPVPSDA  60
LMGLSPVHQA NVDDGPLRMA LKSKAFVDSS PLQKDKLNYV QEITGAALLY PSKYFDAQQP  120
GVFQTQSPVS VLETSISYSG GKTVPIKSDI TIPVRTRSKR ARPAVNPWIL IPPLSSTAAS  180
KKTSSGAGKK TRGERKMAVN DDGSEVCNNG VTPDQACSYL VKKCTHCEVT KTPQWREGPM  240
GPKTLCNACG VRYRSGRLFP EYRPAASPTF VPMLHSNSHR KVVEMRRKAI QEAAPIVEDS  300
LKRAAETRCS ALQDLDSFSR GFALTH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1155160RTRSKR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08010.21e-47GATA family protein