PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019166324.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family B3
Protein Properties Length: 368aa    MW: 42084.8 Da    PI: 5.0884
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019166324.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.51.5e-10381042190
                     HH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS
              B3  21 kfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sef 90 
                     +f+e+   +  +++++ l+++  ++W +++  +k +g++++++GW++ vk+n + +gD ++F ++++ + f
  XP_019166324.1  38 SFMESVRRD--SKMKVLLRNQVMKVWMIEI--SKIGGAMFFENGWEKVVKDNCVTDGDQLLFIYKEDcDVF 104
                     678777655..6789***************..*******************************99875655 PP
2B334.53.6e-112663361083
                     HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
              B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                     + ++g l++pk+ ++++++k   + t+tl+d +gr+W+  ++++  + r++l++GW+  ++ n + e D ++ +
  XP_019166324.1 266 TKRRGDLYVPKEVVRDYNLK--LPPTVTLRDIKGREWTSIVKVWADG-RTWLSGGWRPLCRRNLIGEEDQCICE 336
                     567899***********888..7779***************999986.779******************99876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    
MCRNHLTGKT SKRAEALMLE KDDSRKRSTF GSLKEIPSFM ESVRRDSKMK VLLRNQVMKV  60
WMIEISKIGG AMFFENGWEK VVKDNCVTDG DQLLFIYKED CDVFDFIVID SFGCEKIGVE  120
GEHAQVVECI RKGSGGESRD VFVLKADIYS RVKKNIKKEV DMDMDIDIGI SVKKNVKKEK  180
DAVMDANARE EENDDGHHRA IVSQDMDATE EDDDDDDDDG HTLPQEKKIG SSGSKRGIPE  240
HYGADLFLSG RYIQPDNAYF VTRIRTKRRG DLYVPKEVVR DYNLKLPPTV TLRDIKGREW  300
TSIVKVWADG RTWLSGGWRP LCRRNLIGEE DQCICEFLPP QLGNQDNMVL QITVVKEDAT  360
LVRNDEDM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.18e-11B3 family protein