PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019166154.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

Protein Properties

Length: 411aa MW: 46343.1 Da PI: 4.6852

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019166154.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	42.5	1.2e-13	64	152	1	97
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f+k l++ +++ ++ lp +f++ + ++ + t++le + +++e k+i ++++ l +GW++F a++L+egD vvF+l+++ +f +v XP_019166154.1 64 FIKFLSRTYATLGFWVGLPPDFCKMYL-PP-HDHTIQLEGDNEKQYETKFIAERQR----LCGGWRGFSLAHNLQEGDAVVFHLVQQYKF--KVY 150 88999999999999*******9994.33.5569***********555554....899*******************997666..555 PP EE CS B3 96 vf 97 + XP_019166154.1 151 TV 152 44 PP

Sequence ? help Back to Top
Protein Sequence Length: 411 aa Download sequence
MNKSSSSVSP SMGTPLNGEV SATNRKPAGV MIKESCKKSA AYSSLTMQKA KALQASLDPT 60 QPSFIKFLSR TYATLGFWVG LPPDFCKMYL PPHDHTIQLE GDNEKQYETK FIAERQRLCG 120 GWRGFSLAHN LQEGDAVVFH LVQQYKFKVY TVRANNSDHM HERQLETAAK DVNVCQKMKT 180 VVEQTVQTPY LEENCQNDGQ PETDYELGDE GFIFENDNED SPAETEDDSS TEFFVDLKNF 240 SIVVNGCPVD SKFSISARLK YYELCCAQKS YLHDGFAENI NYTLAVGIIL ETVSIADNIK 300 ACTLSTPLTD FKSWDTTLSG FMHLGMDVGF LQERLSKLSS RAIEFQGSHE ASRHSEIITE 360 ENDLNREIES VEKKLMELKE AMMDVQVERE ALETQFATCN LAFCEMATRP W

Sequence ? help Back to Top

Protein Sequence Length: 411 aa Download sequence

MNKSSSSVSP SMGTPLNGEV SATNRKPAGV MIKESCKKSA AYSSLTMQKA KALQASLDPT  60
QPSFIKFLSR TYATLGFWVG LPPDFCKMYL PPHDHTIQLE GDNEKQYETK FIAERQRLCG  120
GWRGFSLAHN LQEGDAVVFH LVQQYKFKVY TVRANNSDHM HERQLETAAK DVNVCQKMKT  180
VVEQTVQTPY LEENCQNDGQ PETDYELGDE GFIFENDNED SPAETEDDSS TEFFVDLKNF  240
SIVVNGCPVD SKFSISARLK YYELCCAQKS YLHDGFAENI NYTLAVGIIL ETVSIADNIK  300
ACTLSTPLTD FKSWDTTLSG FMHLGMDVGF LQERLSKLSS RAIEFQGSHE ASRHSEIITE  360
ENDLNREIES VEKKLMELKE AMMDVQVERE ALETQFATCN LAFCEMATRP W

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	9e-30	B3 family protein