PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019166001.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C2H2

Protein Properties

Length: 275aa MW: 30391.7 Da PI: 8.1316

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019166001.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.1	0.00014	213	235	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp C+ +Fs+ L+ H ++ H XP_019166001.1 213 QCPMCNLRFSTGTALVEHVQKvH 235 7******************9988 PP
2	zf-C2H2	16.2	2.9e-05	247	269	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp C+k F+++ +L+ H + H XP_019166001.1 247 VCPRCSKGFRDPVSLVEHVERdH 269 7*****************99888 PP

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence
MGTPAFPNLG KHCSVDDCRQ IDFLPFTCDC CHKVFCLEHR SYARHQCPKG NKHDVTVVIC 60 PLCAKGVHLI PDEDPNITWQ SHVNTDCDPS NYEKATKKRK CPVPRCKEVL TFSNTIKCRD 120 CDIDHCLKHR FGPDHNCPGP KKPEPAFQFL GFLSRKEEPK KAPAPSSSRW TTSLLNAATS 180 GIAKLSNEFN QALQIGGDGG GPQSSVSKQQ VEQCPMCNLR FSTGTALVEH VQKVHEKNGV 240 MNVSIDVCPR CSKGFRDPVS LVEHVERDHG GASKA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41835.1	1e-124	C2H2 family protein