PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019165936.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

Protein Properties

Length: 735aa MW: 80377.1 Da PI: 5.6524

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019165936.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	62.4	7.4e-20	594	690	2	95
EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr.sef 90 +kvl++sdv+++gr+vlpkk ae+ +++++ ++ + +ed ++r+W++k+++ ++ks++y+l+ ++ +Fv+angL+egDf+v++ + +++ XP_019165936.1 594 QKVLKQSDVGSLGRIVLPKKEAETQlpELDSRDGISIAMEDiGTSRVWNMKYRFwpNNKSRMYLLE-NTGDFVRANGLQEGDFIVIYA--DmKCG 685 79******************999999999******7778***99777777777777.******************5..44888 PP ..EEE CS B3 91 elvvk 95 +++++ XP_019165936.1 686 KYLIR 690 77766 PP

Sequence ? help Back to Top
Protein Sequence Length: 735 aa Download sequence
MKREYDKDGD IQDLHATGGG GGGEVEAVTT EEIYGGEGGD FDPMEIWLES VDEEQHLDVN 60 DFPPLPDFPC MSSSSSTSSV PAGVVKPSSS SSASSSSSSA ASWAVIKSDG EEDPAAKKFH 120 LQTGCAAAMT PSASMDPSGG IPPPPEDSFT DDDCINVMEN LGYMDFINGD DIWDPISIFQ 180 TENFQEDQPP PPPQAAAARS QFEELQQNQE DDDSKAAETA DLSFLQGNGE LAAIFFDWLK 240 QNKDCISAED MRNIKLKRST IESASKRLGS SKEGKKQLLK LILEWVQQYQ LQKKNSREEA 300 AAAAAAASDH QSTGGGGHFQ AETFLQPTDT APSCFFPSPW TPPPPPPYIP DANNAAMMAA 360 AQPPFPVFQP HAIGYSNIGD PYNCGGGASF TPMHVNSGHF SHPTEYHQPA AVDTAQSWQS 420 SEFMAAAAAA PSFNPYPDNN NNRIAAESGH QPQALYGSEY PYQLYDGNGE RLMRLGSSAT 480 KEARKKRMAR QRRLSSHHFR HHNNNHHHHA QNYDPHHAMR MGVDTVLPHQ VSNLGNWVYW 540 SPAASEAPPP MVVLPPAEAA PQPPPAQQQN HQKQSSSDRR QGSKPEKNLK FLLQKVLKQS 600 DVGSLGRIVL PKKEAETQLP ELDSRDGISI AMEDIGTSRV WNMKYRFWPN NKSRMYLLEN 660 TGDFVRANGL QEGDFIVIYA DMKCGKYLIR GVKVRQHGAR SDGKKPARKN PRTLPPSSPA 720 TATSPAISLI KQTVN

Sequence ? help Back to Top

Protein Sequence Length: 735 aa Download sequence

MKREYDKDGD IQDLHATGGG GGGEVEAVTT EEIYGGEGGD FDPMEIWLES VDEEQHLDVN  60
DFPPLPDFPC MSSSSSTSSV PAGVVKPSSS SSASSSSSSA ASWAVIKSDG EEDPAAKKFH  120
LQTGCAAAMT PSASMDPSGG IPPPPEDSFT DDDCINVMEN LGYMDFINGD DIWDPISIFQ  180
TENFQEDQPP PPPQAAAARS QFEELQQNQE DDDSKAAETA DLSFLQGNGE LAAIFFDWLK  240
QNKDCISAED MRNIKLKRST IESASKRLGS SKEGKKQLLK LILEWVQQYQ LQKKNSREEA  300
AAAAAAASDH QSTGGGGHFQ AETFLQPTDT APSCFFPSPW TPPPPPPYIP DANNAAMMAA  360
AQPPFPVFQP HAIGYSNIGD PYNCGGGASF TPMHVNSGHF SHPTEYHQPA AVDTAQSWQS  420
SEFMAAAAAA PSFNPYPDNN NNRIAAESGH QPQALYGSEY PYQLYDGNGE RLMRLGSSAT  480
KEARKKRMAR QRRLSSHHFR HHNNNHHHHA QNYDPHHAMR MGVDTVLPHQ VSNLGNWVYW  540
SPAASEAPPP MVVLPPAEAA PQPPPAQQQN HQKQSSSDRR QGSKPEKNLK FLLQKVLKQS  600
DVGSLGRIVL PKKEAETQLP ELDSRDGISI AMEDIGTSRV WNMKYRFWPN NKSRMYLLEN  660
TGDFVRANGL QEGDFIVIYA DMKCGKYLIR GVKVRQHGAR SDGKKPARKN PRTLPPSSPA  720
TATSPAISLI KQTVN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24650.1	1e-79	B3 family protein