PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019165433.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family BBR-BPC
Protein Properties Length: 310aa    MW: 34888.1 Da    PI: 9.7182
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019165433.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind320.93.9e-9813101301
       GAGA_bind   1 mdddgsrernkg.yye.........paaslkenlglqlmss...iaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkll 82 
                     mdd  ++ r++   y+         +++++ke ++  lm +    aerda+i+er+ al+ekkaa+ erd+  +qrd+a+aer++al erdn+++
  XP_019165433.1   1 MDDGQENRRQRMdCYRgghpqwsmvSQQQMKE-QNAFLMNMkmlFAERDAAIEERDRALAEKKAAIEERDIVIQQRDAAIAERDNALRERDNAIA 94 
                     66665555776667778888888775568884.4444444311145************************************************* PP

       GAGA_bind  83 alllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkk 177
                     al+++en+++ al  g++++  tk+  +l +++ ++++ s+  +r+   ++a pi+  ++e+ +++++k+ + ++++ +k  ++++k++++s ++
  XP_019165433.1  95 ALQFQENNMSGAL--GYRISGTTKHPSHLTTHRGNNFQSSCN-TRDAPVTDAVPISAVPSEVVKAQQRKQAKISRSNSTKSLDSPRKTKRVS-ED 185
                     *******966555..899999999999888866677776665.5999999******999999998888877766666666666666644443.55 PP

       GAGA_bind 178 vkkesaderskaekksidl.vlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLek 271
                      +++ + + skae++ + l ++n++++Dest+P+PvC+CtG+ rqCYkWGnGGWqS+CCtt++S yPLP+ +++r+ RiagrKmS+++f++lL +
  XP_019165433.1 186 LNRHVTTDGSKAEWDAQYLgSINQINFDESTMPTPVCTCTGVARQCYKWGNGGWQSSCCTTSLSEYPLPQLPHKRHGRIAGRKMSGSVFSRLLTR 280
                     5555555679*********88************************************************************************** PP

       GAGA_bind 272 LaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                     L++ G+dls+p+DLk++WAkHGtn+++ti+
  XP_019165433.1 281 LSSGGHDLSTPLDLKNYWAKHGTNRYITIK 310
                     *****************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    
MDDGQENRRQ RMDCYRGGHP QWSMVSQQQM KEQNAFLMNM KMLFAERDAA IEERDRALAE  60
KKAAIEERDI VIQQRDAAIA ERDNALRERD NAIAALQFQE NNMSGALGYR ISGTTKHPSH  120
LTTHRGNNFQ SSCNTRDAPV TDAVPISAVP SEVVKAQQRK QAKISRSNST KSLDSPRKTK  180
RVSEDLNRHV TTDGSKAEWD AQYLGSINQI NFDESTMPTP VCTCTGVARQ CYKWGNGGWQ  240
SSCCTTSLSE YPLPQLPHKR HGRIAGRKMS GSVFSRLLTR LSSGGHDLST PLDLKNYWAK  300
HGTNRYITIK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G21240.11e-104BBR-BPC family protein