PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019165380.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MIKC_MADS

Protein Properties

Length: 238aa MW: 27159.1 Da PI: 10.0285

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019165380.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	90.2	1.1e-28	10	59	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n++ rqvtfskRrng+lKKA+ELS+LCdaev +iifsstgkly+++s XP_019165380.1 10 RIDNSTSRQVTFSKRRNGLLKKAKELSILCDAEVGLIIFSSTGKLYDFAS 59 8***********************************************86 PP
2	K-box	82	1.3e-27	82	170	10	98
K-box 10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 ++ + +q+e+a+L+++++ Lq+++R+llG++L+ Ls+k+L +Le+qLe slk iR++K+++l+++i+el +k +++en++L k+l XP_019165380.1 82 PMSEVKFWQREAANLRQQLQYLQESHRQLLGKELSGLSIKDLTNLENQLEVSLKGIRTRKEQILTDEIKELNRKGSLVHQENMELCKNL 170 457889******************************************************************************98765 PP

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence
MGRGKIVIRR IDNSTSRQVT FSKRRNGLLK KAKELSILCD AEVGLIIFSS TGKLYDFAST 60 SMKSVIERYN KMKEEHHQLL NPMSEVKFWQ REAANLRQQL QYLQESHRQL LGKELSGLSI 120 KDLTNLENQL EVSLKGIRTR KEQILTDEIK ELNRKGSLVH QENMELCKNL NLIHQENTEL 180 QNKVYGPGRI NEANGSAQAR NTVSNGYDLV PINLQLSQPQ TNINEAPANP MKLGLQLH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37940.1	1e-101	MIKC_MADS family protein