PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_019165299.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 220aa MW: 24758.8 Da PI: 6.0996 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 51.5 | 1.3e-16 | 20 | 64 | 1 | 45 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 k+i+n s r+v fskRr g++ KA+EL++LC++++ i+ s gk XP_019165299.1 20 KKIDNVSHRHVAFSKRRIGLFNKASELCILCGTQAVAIVESYGGK 64 68*********************************9999887775 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence |
MENKTGKKKQ TQGRRKIEIK KIDNVSHRHV AFSKRRIGLF NKASELCILC GTQAVAIVES 60 YGGKRVFTFG HPSADAVIDR FLSNAPRPAS PEPYSPEEEN VAQLYHRAWQ ELAAEKEKIR 120 LEEEEERHHG CRGDNWWHLP IEHMGATELG EFTAALNELK KKAVLRSGEL VAAAAIIADN 180 NNDPNNNNLS SSEVLTMLMN NNDDIVGDCF NWMAADDIYD |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 4e-26 | M-type_MADS family protein |