PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019165084.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

TCP

Protein Properties

Length: 450aa MW: 50816.2 Da PI: 6.5141

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019165084.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	122.6	4.5e-38	93	201	3	133
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaaksaaks 97 +kkdrhski+T++g RdRR+Rls+++a++fFdLqd LGfdk+sktieWL+ ++k aik+l++t++++a + +s XP_019165084.1 93 KKKDRHSKICTARGVRDRRMRLSLQIARKFFDLQDTLGFDKASKTIEWLFSKSKNAIKDLMRTKNINAAGF----------------------SS 165 79***********************************************************88888222......................44 PP TCP 98 kksqksaasalnlakesrakarararertrekmrik 133 +++ ++ s + kesr++arararert ek+++k XP_019165084.1 166 SDEYEEVGSISTATKESRQEARARARERTMEKKKKK 201 556677777899999***************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 450 aa Download sequence
MFPTNHENPF PLPYDHPQNP SSTHHDLDHQ PPPFHLHFPS PFLDDTDDSP LSQVFSQPPQ 60 HGTHDAAAGD NQAGRGGKTK KGGGGGRKRN PGKKKDRHSK ICTARGVRDR RMRLSLQIAR 120 KFFDLQDTLG FDKASKTIEW LFSKSKNAIK DLMRTKNINA AGFSSSDEYE EVGSISTATK 180 ESRQEARARA RERTMEKKKK KMMMMMIRGL ENSSTSSFEQ LGSSSNSPFL EESCCQEIKS 240 NNPCTDLTQP FSRQYLKEEE IRSNNPCTDS AQWFSKSHLG EEEIRSNNTC TDLAQWFSST 300 QYLKEEEIRS NNPCTDFAQW FSKSYLGEEE IRSNNICTDL TRFISKQYLG EEEIRSNNVP 360 LGFENQFSSS VGIMENYQEH NSESFMGFLG NWDLAGAGSG AGISAYTDGL LAPFPGINPS 420 TTLYFDATSF QFRQPLDQER QISYNPYSLG

Sequence ? help Back to Top

Protein Sequence Length: 450 aa Download sequence

MFPTNHENPF PLPYDHPQNP SSTHHDLDHQ PPPFHLHFPS PFLDDTDDSP LSQVFSQPPQ  60
HGTHDAAAGD NQAGRGGKTK KGGGGGRKRN PGKKKDRHSK ICTARGVRDR RMRLSLQIAR  120
KFFDLQDTLG FDKASKTIEW LFSKSKNAIK DLMRTKNINA AGFSSSDEYE EVGSISTATK  180
ESRQEARARA RERTMEKKKK KMMMMMIRGL ENSSTSSFEQ LGSSSNSPFL EESCCQEIKS  240
NNPCTDLTQP FSRQYLKEEE IRSNNPCTDS AQWFSKSHLG EEEIRSNNTC TDLAQWFSST  300
QYLKEEEIRS NNPCTDFAQW FSKSYLGEEE IRSNNICTDL TRFISKQYLG EEEIRSNNVP  360
LGFENQFSSS VGIMENYQEH NSESFMGFLG NWDLAGAGSG AGISAYTDGL LAPFPGINPS  420
TTLYFDATSF QFRQPLDQER QISYNPYSLG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	76	84	GGKTKKGGG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68800.1	5e-28	TCP family protein