PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_019163164.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 198aa MW: 22988.3 Da PI: 10.2732 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 86.7 | 1.4e-27 | 9 | 57 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 krien s rqvtfskRrng+lKKA+ELSvLCda+va++ifs+tgk y + XP_019163164.1 9 KRIENPSSRQVTFSKRRNGLLKKAYELSVLCDAQVALLIFSPTGKSYHF 57 79*******************************************9988 PP | |||||||
2 | K-box | 61.8 | 2.6e-21 | 84 | 171 | 12 | 99 |
K-box 12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 ++++ ++e++ +k+ +e+L++ +h+ Ged++ L ++eL+qLe+qL ++++iRskK +++ e+i+ l++k k l+een L+k+++ XP_019163164.1 84 RQTQVGRNEIEDMKRTVESLEERDKHFAGEDISMLGMRELKQLERQLRIGVERIRSKKRRMISENINWLKRKHKLLKEENIHLQKQVK 171 56778899*****************************************************************************986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence |
MGRGKVELKR IENPSSRQVT FSKRRNGLLK KAYELSVLCD AQVALLIFSP TGKSYHFGSH 60 DIDGTIARYK REVGLSISNE RGLRQTQVGR NEIEDMKRTV ESLEERDKHF AGEDISMLGM 120 RELKQLERQL RIGVERIRSK KRRMISENIN WLKRKHKLLK EENIHLQKQV KMHEHQETGS 180 NGNSNPILLD PEADEMVD |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45650.1 | 7e-49 | MIKC_MADS family protein |