PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_019163163.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 199aa MW: 23103.4 Da PI: 10.16 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 86.6 | 1.4e-27 | 9 | 57 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 krien s rqvtfskRrng+lKKA+ELSvLCda+va++ifs+tgk y + XP_019163163.1 9 KRIENPSSRQVTFSKRRNGLLKKAYELSVLCDAQVALLIFSPTGKSYHF 57 79*******************************************9988 PP | |||||||
2 | K-box | 61.8 | 2.7e-21 | 85 | 172 | 12 | 99 |
K-box 12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 ++++ ++e++ +k+ +e+L++ +h+ Ged++ L ++eL+qLe+qL ++++iRskK +++ e+i+ l++k k l+een L+k+++ XP_019163163.1 85 RQTQVGRNEIEDMKRTVESLEERDKHFAGEDISMLGMRELKQLERQLRIGVERIRSKKRRMISENINWLKRKHKLLKEENIHLQKQVK 172 56778899*****************************************************************************986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence |
MGRGKVELKR IENPSSRQVT FSKRRNGLLK KAYELSVLCD AQVALLIFSP TGKSYHFGSH 60 DDIDGTIARY KREVGLSISN ERGLRQTQVG RNEIEDMKRT VESLEERDKH FAGEDISMLG 120 MRELKQLERQ LRIGVERIRS KKRRMISENI NWLKRKHKLL KEENIHLQKQ VKMHEHQETG 180 SNGNSNPILL DPEADEMVD |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45650.1 | 5e-47 | MIKC_MADS family protein |