PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019162943.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB

Protein Properties

Length: 359aa MW: 41155.2 Da PI: 9.7267

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019162943.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	48.6	1.8e-15	4	53	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48 r+rW +eEd ll +vkq+G++ W++++++m+ ++R +k+c +rw +yl XP_019162943.1 4 RQRWRAEEDALLRAYVKQYGPKEWHLVSQRMNtpLNRDAKSCLERWKNYL 53 89**********************************************97 PP
2	Myb_DNA-binding	36.3	1.3e-11	59	103	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+ T+eE+ l +++ +++G++ Wk+Ia++++ gRt+k + +w + XP_019162943.1 59 KGSLTEEEQRLVIHLQAKHGNK-WKKIAAEVP-GRTAKRLGKWWEVF 103 6788****************.*****.***999999766 PP

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence
MKERQRWRAE EDALLRAYVK QYGPKEWHLV SQRMNTPLNR DAKSCLERWK NYLKPGIKKG 60 SLTEEEQRLV IHLQAKHGNK WKKIAAEVPG RTAKRLGKWW EVFKEKQQRE QKENNKIVEP 120 VEEGKYDHIL ETFAEKIVKE RSVPGLLMAS SKGGFLHADP PAPTPPNLLP PWLSNTTTSS 180 AVRPPSPSVT LSLSPSTVPP SPVIPWLQSD RGPDKTPLTL SGFPPHHGIS PPCGENPMVT 240 ELVDCCKDLE EGHRAWAAHK KEAAWRLRRV ELQLESEKSC KIREKREEFE SKMKALMEEQ 300 KTSLDRIESD YKEQLAGLRR DAEAKEQKLA EQWASKHLRL TKFLEQMGCP PRLAEPNGQ

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence

MKERQRWRAE EDALLRAYVK QYGPKEWHLV SQRMNTPLNR DAKSCLERWK NYLKPGIKKG  60
SLTEEEQRLV IHLQAKHGNK WKKIAAEVPG RTAKRLGKWW EVFKEKQQRE QKENNKIVEP  120
VEEGKYDHIL ETFAEKIVKE RSVPGLLMAS SKGGFLHADP PAPTPPNLLP PWLSNTTTSS  180
AVRPPSPSVT LSLSPSTVPP SPVIPWLQSD RGPDKTPLTL SGFPPHHGIS PPCGENPMVT  240
ELVDCCKDLE EGHRAWAAHK KEAAWRLRRV ELQLESEKSC KIREKREEFE SKMKALMEEQ  300
KTSLDRIESD YKEQLAGLRR DAEAKEQKLA EQWASKHLRL TKFLEQMGCP PRLAEPNGQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37630.1	1e-145	MYB family protein