PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019162905.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ARF
Protein Properties Length: 725aa    MW: 79512.5 Da    PI: 7.1005
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019162905.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B377.61.3e-24147248199
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k+lt sd++++g +++p++ ae++      + +++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+F ++   +
  XP_019162905.1 147 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyK-QQRPSQELVARDLHGIEWKFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRS--GD 238
                     99****************************963.3445679************************************************54..68 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                     +el+++v+r+
  XP_019162905.1 239 GELRLGVRRA 248
                     8889999986 PP
2Auxin_resp102.55.2e-34273353182
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                     +++a+stk vF+++YnPr s+seF+ +++k++++l +++s+Gm fkm+ eted++er  +G++ gvsd+dpvrWp+SkWrsL
  XP_019162905.1 273 VVNAISTKGVFHICYNPRHSSSEFIMPYHKFSRSLIHSFSAGMTFKMRHETEDAAERY-TGLILGVSDVDPVRWPGSKWRSL 353
                     689***************************************************9976.*********************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 725 aa     Download sequence    
MMSGLIDLNT VSNGDGGDET SSSSANSELT ASSGTAVASV CMELWHACAG PLISLPKKGS  60
AVVYLPQGHL EHLCDYTAVA NDLPPHVFCR VVDVKLQAEL ATDEVYAHVS LVPDNQIEQK  120
WSNGETEVDN GEDDNEGIGK STAPHMFCKT LTASDTSTHG GFSVPRRAAE DCFPPLDYKQ  180
QRPSQELVAR DLHGIEWKFR HIYRGQPRRH LLTTGWSAFV NKKKLVSGDA VLFLRSGDGE  240
LRLGVRRADQ AKSGTPYLAP LSQHMNISGI ADVVNAISTK GVFHICYNPR HSSSEFIMPY  300
HKFSRSLIHS FSAGMTFKMR HETEDAAERY TGLILGVSDV DPVRWPGSKW RSLLVRWDDL  360
DSSRHNRVSP WEIEPSGALH GPSIMVVPAA KRTRVGLPNV KADFSIPGDR MAVSENGDPS  420
RFQVLQGQEV LGLNTTYGGI DRFPPRIRYF PDSDDFRISG MSRGIIPQFA DPFESHERTG  480
FVESQRFNKV LQGQETFPNT LYGKGVTGPV QPTHGSGIVG GIQVQSHLSM RSTPPIHNCI  540
AQRNPSTPIV QVSSPPSVLM FQQANSPAKF QPLYSHNLGK PDNGNPAAKY ERQLPSYPPF  600
EDGPRVEDLQ RISSFSSLKE HKLLGFSHLL GSQTSVKGNQ NLVSSMCNSN CRIFGFPLNE  660
GRSGITKDNN PIQATTSLGH EITPFPCSEG QLHLRPPLIT SVAGSNYTNV NDLYPARDAL  720
LDIAL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33860.11e-174ARF family protein