PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019162903.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ARF
Protein Properties Length: 726aa    MW: 79640.6 Da    PI: 7.1005
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019162903.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B377.61.3e-24148249199
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k+lt sd++++g +++p++ ae++      + +++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+F ++   +
  XP_019162903.1 148 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyK-QQRPSQELVARDLHGIEWKFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRS--GD 239
                     99****************************963.3445679************************************************54..68 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                     +el+++v+r+
  XP_019162903.1 240 GELRLGVRRA 249
                     8889999986 PP
2Auxin_resp102.55.2e-34274354182
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                     +++a+stk vF+++YnPr s+seF+ +++k++++l +++s+Gm fkm+ eted++er  +G++ gvsd+dpvrWp+SkWrsL
  XP_019162903.1 274 VVNAISTKGVFHICYNPRHSSSEFIMPYHKFSRSLIHSFSAGMTFKMRHETEDAAERY-TGLILGVSDVDPVRWPGSKWRSL 354
                     689***************************************************9976.*********************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 726 aa     Download sequence    
MMSGLIDLNT VSNGDGGDET SSSSANSELT ASSGTAVASV CMELWHACAG PLISLPKKGS  60
AVVYLPQGHL EHLCDYTAVA NDLPPHVFCR VVDVKLQAEL ATDEVYAHVS LVPDNQQIEQ  120
KWSNGETEVD NGEDDNEGIG KSTAPHMFCK TLTASDTSTH GGFSVPRRAA EDCFPPLDYK  180
QQRPSQELVA RDLHGIEWKF RHIYRGQPRR HLLTTGWSAF VNKKKLVSGD AVLFLRSGDG  240
ELRLGVRRAD QAKSGTPYLA PLSQHMNISG IADVVNAIST KGVFHICYNP RHSSSEFIMP  300
YHKFSRSLIH SFSAGMTFKM RHETEDAAER YTGLILGVSD VDPVRWPGSK WRSLLVRWDD  360
LDSSRHNRVS PWEIEPSGAL HGPSIMVVPA AKRTRVGLPN VKADFSIPGD RMAVSENGDP  420
SRFQVLQGQE VLGLNTTYGG IDRFPPRIRY FPDSDDFRIS GMSRGIIPQF ADPFESHERT  480
GFVESQRFNK VLQGQETFPN TLYGKGVTGP VQPTHGSGIV GGIQVQSHLS MRSTPPIHNC  540
IAQRNPSTPI VQVSSPPSVL MFQQANSPAK FQPLYSHNLG KPDNGNPAAK YERQLPSYPP  600
FEDGPRVEDL QRISSFSSLK EHKLLGFSHL LGSQTSVKGN QNLVSSMCNS NCRIFGFPLN  660
EGRSGITKDN NPIQATTSLG HEITPFPCSE GQLHLRPPLI TSVAGSNYTN VNDLYPARDA  720
LLDIAL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33860.11e-175ARF family protein