PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_019162902.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | ARF | ||||||||
Protein Properties | Length: 726aa MW: 79640.6 Da PI: 7.1005 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 77.6 | 1.3e-24 | 148 | 249 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+lt sd++++g +++p++ ae++ + +++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+F ++ + XP_019162902.1 148 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyK-QQRPSQELVARDLHGIEWKFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRS--GD 239 99****************************963.3445679************************************************54..68 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 +el+++v+r+ XP_019162902.1 240 GELRLGVRRA 249 8889999986 PP | |||||||
2 | Auxin_resp | 102.5 | 5.2e-34 | 274 | 354 | 1 | 82 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 +++a+stk vF+++YnPr s+seF+ +++k++++l +++s+Gm fkm+ eted++er +G++ gvsd+dpvrWp+SkWrsL XP_019162902.1 274 VVNAISTKGVFHICYNPRHSSSEFIMPYHKFSRSLIHSFSAGMTFKMRHETEDAAERY-TGLILGVSDVDPVRWPGSKWRSL 354 689***************************************************9976.*********************99 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 726 aa Download sequence |
MMSGLIDLNT VSNGDGGDET SSSSANSELT ASSGTAVASV CMELWHACAG PLISLPKKGS 60 AVVYLPQGHL EHLCDYTAVA NDLPPHVFCR VVDVKLQAEL ATDEVYAHVS LVPDNQQIEQ 120 KWSNGETEVD NGEDDNEGIG KSTAPHMFCK TLTASDTSTH GGFSVPRRAA EDCFPPLDYK 180 QQRPSQELVA RDLHGIEWKF RHIYRGQPRR HLLTTGWSAF VNKKKLVSGD AVLFLRSGDG 240 ELRLGVRRAD QAKSGTPYLA PLSQHMNISG IADVVNAIST KGVFHICYNP RHSSSEFIMP 300 YHKFSRSLIH SFSAGMTFKM RHETEDAAER YTGLILGVSD VDPVRWPGSK WRSLLVRWDD 360 LDSSRHNRVS PWEIEPSGAL HGPSIMVVPA AKRTRVGLPN VKADFSIPGD RMAVSENGDP 420 SRFQVLQGQE VLGLNTTYGG IDRFPPRIRY FPDSDDFRIS GMSRGIIPQF ADPFESHERT 480 GFVESQRFNK VLQGQETFPN TLYGKGVTGP VQPTHGSGIV GGIQVQSHLS MRSTPPIHNC 540 IAQRNPSTPI VQVSSPPSVL MFQQANSPAK FQPLYSHNLG KPDNGNPAAK YERQLPSYPP 600 FEDGPRVEDL QRISSFSSLK EHKLLGFSHL LGSQTSVKGN QNLVSSMCNS NCRIFGFPLN 660 EGRSGITKDN NPIQATTSLG HEITPFPCSE GQLHLRPPLI TSVAGSNYTN VNDLYPARDA 720 LLDIAL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33860.1 | 1e-175 | ARF family protein |