PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019162025.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GRAS
Protein Properties Length: 578aa    MW: 64452.4 Da    PI: 7.4238
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019162025.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS296.75.8e-911925711374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn...........sseelaalklf 84 
                     lv+lLl++Ae vs++++ +a +l+++ ++ as +g+p+qR+a+yf+ AL+ar+ r   ++ k  p+s++++++            s+  +a+ ++
  XP_019162025.1 192 LVQLLLAAAEKVSDHQFDRAIRLVSQCRNSASCTGTPVQRAAFYFADALQARIER---QTGKPPPSSSSNDDDygngvkdgkclASRYDMAYLIW 283
                     689****************************************************...778777777777776888887766655555566677* PP

            GRAS  85 sevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvp 175
                     +++ P+ ++ +l a q+Il+ v ++ +vH +Df +  G+QW +L+qaL++R+    +g+  +R T+++    ++ke++eetg+rL++fA+++++p
  XP_019162025.1 284 HQTLPFSQVVQLSATQTILDHVVTKPKVHLVDFYLRTGVQWSTLMQALSERAaaadSGQRYFRFTAIET---TEKEKVEETGKRLESFATQFNLP 375
                     ***************************************************988888899*********...58********************* PP

            GRAS 176 fefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfds 270
                     f++nvl+  +l+ ++ e+ ++k +Ea++++ ++ l ++ +++v+les    v++++ +l+P v+vv e ea++ns+sF++rf++al yysa fd+
  XP_019162025.1 376 FSINVLYIPDLKHFTAEQVEIKADEAVVIHASFILRTMISKPVELES----VMRAITRLKPSVMVVQEVEANLNSPSFVHRFIDALFYYSAYFDA 466
                     **********************************************9....******************************************** PP

            GRAS 271 leaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkd 364
                     le ++ r++++r+++E   +   i+n+va+eg+er+ r  +++ Wre ++++G ++ +ls++    a++ +++++ +   +v  + +slv gWk+
  XP_019162025.1 467 LEDTMRRDDQHRASIESGSVLDGIRNIVAAEGRERVTRSVSMQVWREFFGRFGVEETELSQTCWVHANMAVQQFAcKSSCSVSGNGKSLVVGWKG 561
                     ***************************************************************************9999**************** PP

            GRAS 365 rpLvsvSaWr 374
                      p++s+SaW+
  XP_019162025.1 562 TPIYSFSAWK 571
                     *********8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 578 aa     Download sequence    
MATHNFFSSS SSSQSSSTFT FNHIPISSNS SAKAYDQGKA SSSSKIIDDN KQLASGFHGY  60
GDDVDLFCVK YGLYQENDQL LGVERQFITS NSSNNIQEST KLQAAEKAWP PLSPATLRIL  120
GNRPNSLAAA ASSGDGGRDH HQKLSAMQIV RLAGERFVQF SDHKFININI FKHPYSSTLS  180
ELCSQDKQDV ELVQLLLAAA EKVSDHQFDR AIRLVSQCRN SASCTGTPVQ RAAFYFADAL  240
QARIERQTGK PPPSSSSNDD DYGNGVKDGK CLASRYDMAY LIWHQTLPFS QVVQLSATQT  300
ILDHVVTKPK VHLVDFYLRT GVQWSTLMQA LSERAAAADS GQRYFRFTAI ETTEKEKVEE  360
TGKRLESFAT QFNLPFSINV LYIPDLKHFT AEQVEIKADE AVVIHASFIL RTMISKPVEL  420
ESVMRAITRL KPSVMVVQEV EANLNSPSFV HRFIDALFYY SAYFDALEDT MRRDDQHRAS  480
IESGSVLDGI RNIVAAEGRE RVTRSVSMQV WREFFGRFGV EETELSQTCW VHANMAVQQF  540
ACKSSCSVSG NGKSLVVGWK GTPIYSFSAW KFRSRPAS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.18e-43GRAS family protein