PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019161852.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 520aa MW: 56831.7 Da PI: 7.5347

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019161852.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	50.8	3.1e-16	356	403	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+h ++Er+RR+r+N++f +Lr+++P+ K++Ka+iLe A+ YI++L+ XP_019161852.1 356 RTHVQAERQRRERLNQRFYTLRTMVPNV-----SKMDKASILEDAIAYINQLE 403 68***********************6.....5***************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 520 aa Download sequence
MKDYKLPSAR KCGANAATTN GYIMEAFLST APAFPAPPPT VINSDSRQPA TAVAVGEDGF 60 QENLQRRLQI LVDGAAEKWT YAIFWRSPAA GFEGQAGLAW GDGYYKGDVE KPTPRRSSSP 120 EMVAEQARRK RVLRELYALV ATPAAGSDAI DEEITDPEWF FLISMNQSFQ NDSNLPGHAF 180 YRSNRVWISG AGELDSAPFE RAKQGKRLGL QTMACIPSQN GVVELGSTDL ILQNDAHLIN 240 QIGVLFNFEE NNDNNNDNNN NFAMGLTSRS SCLSNPSSVM PSQEDSIPSV TSKRMAVEKE 300 KTPARCATPR RRKKDDGVAL ALLASGGGVD SPPSGGGGER PKKRARKAAN GKEETRTHVQ 360 AERQRRERLN QRFYTLRTMV PNVSKMDKAS ILEDAIAYIN QLESKLGQNA AADPKPSSPA 420 QNGKNIEDAG EEEDADKGGV DVDVNIIGED AMIKIECSDK KKHPSARLMA ALKELDLHIR 480 HANVSVANKL MIQQATVKMG SRHYTSEQLR SALESRLAEN

Sequence ? help Back to Top

Protein Sequence Length: 520 aa Download sequence

MKDYKLPSAR KCGANAATTN GYIMEAFLST APAFPAPPPT VINSDSRQPA TAVAVGEDGF  60
QENLQRRLQI LVDGAAEKWT YAIFWRSPAA GFEGQAGLAW GDGYYKGDVE KPTPRRSSSP  120
EMVAEQARRK RVLRELYALV ATPAAGSDAI DEEITDPEWF FLISMNQSFQ NDSNLPGHAF  180
YRSNRVWISG AGELDSAPFE RAKQGKRLGL QTMACIPSQN GVVELGSTDL ILQNDAHLIN  240
QIGVLFNFEE NNDNNNDNNN NFAMGLTSRS SCLSNPSSVM PSQEDSIPSV TSKRMAVEKE  300
KTPARCATPR RRKKDDGVAL ALLASGGGVD SPPSGGGGER PKKRARKAAN GKEETRTHVQ  360
AERQRRERLN QRFYTLRTMV PNVSKMDKAS ILEDAIAYIN QLESKLGQNA AADPKPSSPA  420
QNGKNIEDAG EEEDADKGGV DVDVNIIGED AMIKIECSDK KKHPSARLMA ALKELDLHIR  480
HANVSVANKL MIQQATVKMG SRHYTSEQLR SALESRLAEN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	309	313	PRRRK
2	310	315	RRRKKD
3	363	368	RQRRER

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32640.1	1e-58	bHLH family protein