PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019161462.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

LBD

Protein Properties

Length: 282aa MW: 31851.2 Da PI: 4.8048

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019161462.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	127.7	5.4e-40	10	110	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlkael 94 aCaaCk++rrkCa+dCvlapyfpa+qpk f+n+h+lFG sn++k+lk+l++e+ + dam+s+++eA++r r PvyG+v+ i l+qql+q+ el XP_019161462.1 10 ACAACKYQRRKCASDCVLAPYFPANQPKMFQNAHRLFGISNITKILKQLDDEDqKADAMKSIIFEADMRERFPVYGCVEYICYLRQQLQQTMDEL 104 7**********************************************666649************************************** PP DUF260 95 allkee 100 +++ ++ XP_019161462.1 105 HYVYTQ 110 998765 PP

Sequence ? help Back to Top
Protein Sequence Length: 282 aa Download sequence
MTVKGGTSPA CAACKYQRRK CASDCVLAPY FPANQPKMFQ NAHRLFGISN ITKILKQLDD 60 EDQKADAMKS IIFEADMRER FPVYGCVEYI CYLRQQLQQT MDELHYVYTQ LALCKEQQLL 120 GSVVNSHNNN NNNNSNNYDH QQHTLLQHYG MNNAAEMPYP MNVMFGGGED DMGEGESSES 180 VGKPNLLGVE PSSYYEHPTD VLVKNTNYNN HMSLPSFPNE HSQDYGLVAF NNTIADDRQS 240 YIETKETCES SSESSFKDTT QSNEELSRSE LKNAAAYFSL TS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47870.1	9e-42	LBD family protein