PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019161123.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GRAS
Protein Properties Length: 491aa    MW: 56355.5 Da    PI: 5.0445
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019161123.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS180.21.5e-551334902373
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                      +lL + Aea+++g+ ela+ +++r++  asp g++++R+a+ + e  ++   +           +++s    ++  +a+++f+++ P+ +f+h+
  XP_019161123.1 133 HHLLGAYAEAMENGHEELAEVIVKRIRGKASPLGETLERIAHSLFESNKEDQEG---------YLRQES---IKNFEQAFRAFYQILPCGRFAHF 215
                     79999*************************************999986666665.........344444...77888999*************** PP

            GRAS  97 taNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     +aN+aIlea+ ++ e+vHiiDfd+++G+QWp+ ++a+a++++    lR+T ++ ++++  ++ ++eet++rL + A+ +g++++++    +++e+
  XP_019161123.1 216 AANSAILEALPNDaETVHIIDFDMGEGVQWPPVIEAMAKKRR---ALRLTSIKTNHESpsNQWRYEETKRRLYDHAKPFGLNLQIEE---TSIEE 304
                     **********99889***********************9855...6*******9877788999**********************98...69*** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvksl.......sPkvvvvveqeadh.nsesFlerflealeyysalfdsleakl 275
                     l +e+ r+k++E la n++++l ++  +  +++s+  e+Lk+ k+l       +  ++v+++ e++  n++++   f ++l +y +l++s+e  +
  XP_019161123.1 305 LAIETKRTKKKEWLAFNCMFRLPHMATNMPQTSSRAMEFLKIAKQLlahnsetQTGIIVFAHGESEGcNTSNYTSFFNKKLVHYKSLLESIEWHF 399
                     **************************99999999**********984443333456********9988**************************9 PP

            GRAS 276 pres.eerikvErellgreivnvvacegaerrerhetlekWre.rlee.aGFkpvplsekaakqaklllrkvksdgyrve...eesgslvlgWkd 364
                     p+   e+ri +E  +l++ i +    e          ++ W++ +++  + F p +ls ++  +ak l+ + +s  yrv    +++++++l W++
  XP_019161123.1 400 PAILsEARIALESIFLAPCINS----ESW--------YQDWEQnKIRLtCDFLPQTLSRENLVEAKELVGERESP-YRVSieeQKQNEMILEWRG 481
                     985449********99997753....333........4666551444349***********************66.88876556799******** PP

            GRAS 365 rpLvsvSaW 373
                      pL+ vS W
  XP_019161123.1 482 TPLIRVSTW 490
                     ********* PP
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    
MMQPQLLHPS WPSSYNVDYS THPRTRLYGS HEDSYVRDNY THSTLVSDFT ALFPDVFTEL  60
SSLQNDMQIL SSLPEGEDPV PCEFEDVCKW LNISDSEWSP SLSVVSSEAS FSIAQSSIFP  120
GSGVEVDTQL SLHHLLGAYA EAMENGHEEL AEVIVKRIRG KASPLGETLE RIAHSLFESN  180
KEDQEGYLRQ ESIKNFEQAF RAFYQILPCG RFAHFAANSA ILEALPNDAE TVHIIDFDMG  240
EGVQWPPVIE AMAKKRRALR LTSIKTNHES PSNQWRYEET KRRLYDHAKP FGLNLQIEET  300
SIEELAIETK RTKKKEWLAF NCMFRLPHMA TNMPQTSSRA MEFLKIAKQL LAHNSETQTG  360
IIVFAHGESE GCNTSNYTSF FNKKLVHYKS LLESIEWHFP AILSEARIAL ESIFLAPCIN  420
SESWYQDWEQ NKIRLTCDFL PQTLSRENLV EAKELVGERE SPYRVSIEEQ KQNEMILEWR  480
GTPLIRVSTW M
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.15e-26GRAS family protein