PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019160805.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C2H2

Protein Properties

Length: 1262aa MW: 139105 Da PI: 9.3991

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019160805.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.3	0.00024	1174	1196	3	23
ET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 3 Cp..dCgksFsrksnLkrHirtH 23 Cp Cgk F ++ +L++H r+H XP_019160805.1 1174 CPvkGCGKKFFSHKYLVQHRRVH 1196 9999*****************99 PP
2	zf-C2H2	12.1	0.00061	1232	1258	1	23
EEET..TTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt..H 23 y+C Cg++F+ s++ rH r+ H XP_019160805.1 1232 YVCAeaGCGQTFRFVSDFSRHKRKtgH 1258 89********************99666 PP

Sequence ? help Back to Top
Protein Sequence Length: 1262 aa Download sequence
MGEGSSGVEV LSWLKTLPVA PEYHPTLEEF QDPIAYIFKI EGEASKYGIC KIVPPVGMPP 60 KKTAIANLNK SLAARPRSTG PTFTTRQQQI GFCPRRHRPV QKPVWQSGEN YTLQQFEAKA 120 KGFEKNYLKK SFKKGVSPLE VESLYWKATV DKPFSVEYAN DIPGSAFAPK KADSVGEGAA 180 TVAETEWNMR GVSRAKGSLL KFMKEEIPGV TSPMVYIAMM FSWFAWHVED HDLHSLNYLH 240 MGAGKTWYGV PRDAAVAFEE VIRLQGYGGE INPLVTFATL GEKTTVMSPE VLLNAGVPCC 300 RLVQDVGEFV VTFPRAYHSG FSHGFNCGEA SNIATPGWLR VAKDAAIRRA SINYPPMVSH 360 FQLLYDLALS FCSRMSKNIR TEPRSSRLKD KKKDEGEALV KDFFVQDLEQ NNSLLHMLGR 420 GSSVILLPRN STENFIPANF QGSQFKLKPG LFSSVDCPDD VVETGKDLDL DNPLIGRKQG 480 MKQIPGVCSN KGKSSPLCES SRLPNSGRDS NVSSAIVHAN GNMNTASERA YNCDRSSENG 540 LFSCVTCGIL CYNCVAIVQP TKAAARCLMS TDYASFSQWR EAGCGTMAVD ADTNVTMLGS 600 SSGLMVRRPP DSLFDVSIKP TSQLSDESVG VVSTSRTHKV SSSLGLLAST YGDSSDSEAE 660 ADVSVKDSEG RSMVCSPEDE IPLQLVIDPY ADHRQRRAQR DSETANRTSI LSCGLQDRRA 720 VPSCVPSAQK PPERAVKNAL VVPFGDEDSS RMHVFCLQHA VEVEKELQLI GGAHIYLLCH 780 PDYPKLEAQA KKIAKESGSD HPWNEILFQE ATKEDEKLIR SALDSEEAIH GNGDWAVKLG 840 INLFYSVNLS RSTLYRKQMP YNSVIYNAFG CSSPGGSPTS SENNTKVPGK HKRIVVAGKW 900 CGRVWMSNQV HSLLAERVSD EPEIRRNASA ARFNPDGKPP MRSLECNQTT ETATPVCRTG 960 KKRKSVTESR PPANSKSIKT DDDPDETSSV GFSQQKPKTN LRNKRIKREA ADEPQKDSDK 1020 KNKGGVDFVS EDEVEGGPST RLRRRAPKPA KQQLETKPAK QQLETKPIKA KSALKKPEPK 1080 NPKQQENKKA KKGSGGGGPV MKVPAGNSSN PKKAPAVKNP PISNNGHKKG VPNKGPANSV 1140 KARDEEGEYP CDLEGCVMSF DSKQELVMHK KNICPVKGCG KKFFSHKYLV QHRRVHMDDR 1200 PLKCPWKGCK MTFKWAWART EHIRVHTGAR PYVCAEAGCG QTFRFVSDFS RHKRKTGHST 1260 KK

Sequence ? help Back to Top

Protein Sequence Length: 1262 aa Download sequence

MGEGSSGVEV LSWLKTLPVA PEYHPTLEEF QDPIAYIFKI EGEASKYGIC KIVPPVGMPP  60
KKTAIANLNK SLAARPRSTG PTFTTRQQQI GFCPRRHRPV QKPVWQSGEN YTLQQFEAKA  120
KGFEKNYLKK SFKKGVSPLE VESLYWKATV DKPFSVEYAN DIPGSAFAPK KADSVGEGAA  180
TVAETEWNMR GVSRAKGSLL KFMKEEIPGV TSPMVYIAMM FSWFAWHVED HDLHSLNYLH  240
MGAGKTWYGV PRDAAVAFEE VIRLQGYGGE INPLVTFATL GEKTTVMSPE VLLNAGVPCC  300
RLVQDVGEFV VTFPRAYHSG FSHGFNCGEA SNIATPGWLR VAKDAAIRRA SINYPPMVSH  360
FQLLYDLALS FCSRMSKNIR TEPRSSRLKD KKKDEGEALV KDFFVQDLEQ NNSLLHMLGR  420
GSSVILLPRN STENFIPANF QGSQFKLKPG LFSSVDCPDD VVETGKDLDL DNPLIGRKQG  480
MKQIPGVCSN KGKSSPLCES SRLPNSGRDS NVSSAIVHAN GNMNTASERA YNCDRSSENG  540
LFSCVTCGIL CYNCVAIVQP TKAAARCLMS TDYASFSQWR EAGCGTMAVD ADTNVTMLGS  600
SSGLMVRRPP DSLFDVSIKP TSQLSDESVG VVSTSRTHKV SSSLGLLAST YGDSSDSEAE  660
ADVSVKDSEG RSMVCSPEDE IPLQLVIDPY ADHRQRRAQR DSETANRTSI LSCGLQDRRA  720
VPSCVPSAQK PPERAVKNAL VVPFGDEDSS RMHVFCLQHA VEVEKELQLI GGAHIYLLCH  780
PDYPKLEAQA KKIAKESGSD HPWNEILFQE ATKEDEKLIR SALDSEEAIH GNGDWAVKLG  840
INLFYSVNLS RSTLYRKQMP YNSVIYNAFG CSSPGGSPTS SENNTKVPGK HKRIVVAGKW  900
CGRVWMSNQV HSLLAERVSD EPEIRRNASA ARFNPDGKPP MRSLECNQTT ETATPVCRTG  960
KKRKSVTESR PPANSKSIKT DDDPDETSSV GFSQQKPKTN LRNKRIKREA ADEPQKDSDK  1020
KNKGGVDFVS EDEVEGGPST RLRRRAPKPA KQQLETKPAK QQLETKPIKA KSALKKPEPK  1080
NPKQQENKKA KKGSGGGGPV MKVPAGNSSN PKKAPAVKNP PISNNGHKKG VPNKGPANSV  1140
KARDEEGEYP CDLEGCVMSF DSKQELVMHK KNICPVKGCG KKFFSHKYLV QHRRVHMDDR  1200
PLKCPWKGCK MTFKWAWART EHIRVHTGAR PYVCAEAGCG QTFRFVSDFS RHKRKTGHST  1260
KK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48430.1	0.0	C2H2 family protein