PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019160804.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C2H2

Protein Properties

Length: 1274aa MW: 140346 Da PI: 9.3928

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019160804.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.3	0.00025	1186	1208	3	23
ET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 3 Cp..dCgksFsrksnLkrHirtH 23 Cp Cgk F ++ +L++H r+H XP_019160804.1 1186 CPvkGCGKKFFSHKYLVQHRRVH 1208 9999*****************99 PP
2	zf-C2H2	12.1	0.00061	1244	1270	1	23
EEET..TTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt..H 23 y+C Cg++F+ s++ rH r+ H XP_019160804.1 1244 YVCAeaGCGQTFRFVSDFSRHKRKtgH 1270 89********************99666 PP

Sequence ? help Back to Top
Protein Sequence Length: 1274 aa Download sequence
MGEGSSGVEV LSWLKTLPVA PEYHPTLEEF QDPIAYIFKI EGEASKYGIC KIVPPVGMPP 60 KKTAIANLNK SLAARPRSTG PTFTTRQQQI GFCPRRHRPV QKPVWQSGEN YTLQQFEAKA 120 KGFEKNYLKK SFKKGVSPLE VESLYWKATV DKPFSVEYAN DIPGSAFAPK KADSVGEGAA 180 TVAETEWNMR GVSRAKGSLL KFMKEEIPGV TSPMVYIAMM FSWFAWHVED HDLHSLNYLH 240 MGAGKTWYGV PRDAAVAFEE VIRLQGYGGE INPLVTFATL GEKTTVMSPE VLLNAGVPCC 300 RLVQDVGEFV VTFPRAYHSG FSHGFNCGEA SNIATPGWLR VAKDAAIRRA SINYPPMVSH 360 FQLLYDLALS FCSRMSKNIR TEPRSSRLKD KKKDEGEALV KDFFVQDLEQ NNSLLHMLGR 420 GSSVILLPRN STENFIPANF QGSQFKLKPG LFSSVDCPDD VVETGKDLDL DNPLIGRKQG 480 MKQIPGVCSN KGKSSPLCES SRLPNSGRDS NVSSAIVHAN GNMNTASERA YNCDRSSENG 540 LFSCVTCGIL CYNCVAIVQP TKAAARCLMS TDYASFSQWR EAGCGTMAVD ADTNVTMLGS 600 SSGLMVRRPP DSLFDVSIKP TSQLSDESVG VVSTSRTHKV SSSLGLLAST YGDSSDSEAE 660 ADVSVKDSEG RSMVCSPEDE IPLQLVIDPY ADHRQRRAQR AGGNRSSFDY SVDSETANRT 720 SILSCGLQDR RAVPSCVPSA QKPPERAVKN ALVVPFGDED SSRMHVFCLQ HAVEVEKELQ 780 LIGGAHIYLL CHPDYPKLEA QAKKIAKESG SDHPWNEILF QEATKEDEKL IRSALDSEEA 840 IHGNGDWAVK LGINLFYSVN LSRSTLYRKQ MPYNSVIYNA FGCSSPGGSP TSSENNTKVP 900 GKHKRIVVAG KWCGRVWMSN QVHSLLAERV SDEPEIRRNA SAARFNPDGK PPMRSLECNQ 960 TTETATPVCR TGKKRKSVTE SRPPANSKSI KTDDDPDETS SVGFSQQKPK TNLRNKRIKR 1020 EAADEPQKDS DKKNKGGVDF VSEDEVEGGP STRLRRRAPK PAKQQLETKP AKQQLETKPI 1080 KAKSALKKPE PKNPKQQENK KAKKGSGGGG PVMKVPAGNS SNPKKAPAVK NPPISNNGHK 1140 KGVPNKGPAN SVKARDEEGE YPCDLEGCVM SFDSKQELVM HKKNICPVKG CGKKFFSHKY 1200 LVQHRRVHMD DRPLKCPWKG CKMTFKWAWA RTEHIRVHTG ARPYVCAEAG CGQTFRFVSD 1260 FSRHKRKTGH STKK

Sequence ? help Back to Top

Protein Sequence Length: 1274 aa Download sequence

MGEGSSGVEV LSWLKTLPVA PEYHPTLEEF QDPIAYIFKI EGEASKYGIC KIVPPVGMPP  60
KKTAIANLNK SLAARPRSTG PTFTTRQQQI GFCPRRHRPV QKPVWQSGEN YTLQQFEAKA  120
KGFEKNYLKK SFKKGVSPLE VESLYWKATV DKPFSVEYAN DIPGSAFAPK KADSVGEGAA  180
TVAETEWNMR GVSRAKGSLL KFMKEEIPGV TSPMVYIAMM FSWFAWHVED HDLHSLNYLH  240
MGAGKTWYGV PRDAAVAFEE VIRLQGYGGE INPLVTFATL GEKTTVMSPE VLLNAGVPCC  300
RLVQDVGEFV VTFPRAYHSG FSHGFNCGEA SNIATPGWLR VAKDAAIRRA SINYPPMVSH  360
FQLLYDLALS FCSRMSKNIR TEPRSSRLKD KKKDEGEALV KDFFVQDLEQ NNSLLHMLGR  420
GSSVILLPRN STENFIPANF QGSQFKLKPG LFSSVDCPDD VVETGKDLDL DNPLIGRKQG  480
MKQIPGVCSN KGKSSPLCES SRLPNSGRDS NVSSAIVHAN GNMNTASERA YNCDRSSENG  540
LFSCVTCGIL CYNCVAIVQP TKAAARCLMS TDYASFSQWR EAGCGTMAVD ADTNVTMLGS  600
SSGLMVRRPP DSLFDVSIKP TSQLSDESVG VVSTSRTHKV SSSLGLLAST YGDSSDSEAE  660
ADVSVKDSEG RSMVCSPEDE IPLQLVIDPY ADHRQRRAQR AGGNRSSFDY SVDSETANRT  720
SILSCGLQDR RAVPSCVPSA QKPPERAVKN ALVVPFGDED SSRMHVFCLQ HAVEVEKELQ  780
LIGGAHIYLL CHPDYPKLEA QAKKIAKESG SDHPWNEILF QEATKEDEKL IRSALDSEEA  840
IHGNGDWAVK LGINLFYSVN LSRSTLYRKQ MPYNSVIYNA FGCSSPGGSP TSSENNTKVP  900
GKHKRIVVAG KWCGRVWMSN QVHSLLAERV SDEPEIRRNA SAARFNPDGK PPMRSLECNQ  960
TTETATPVCR TGKKRKSVTE SRPPANSKSI KTDDDPDETS SVGFSQQKPK TNLRNKRIKR  1020
EAADEPQKDS DKKNKGGVDF VSEDEVEGGP STRLRRRAPK PAKQQLETKP AKQQLETKPI  1080
KAKSALKKPE PKNPKQQENK KAKKGSGGGG PVMKVPAGNS SNPKKAPAVK NPPISNNGHK  1140
KGVPNKGPAN SVKARDEEGE YPCDLEGCVM SFDSKQELVM HKKNICPVKG CGKKFFSHKY  1200
LVQHRRVHMD DRPLKCPWKG CKMTFKWAWA RTEHIRVHTG ARPYVCAEAG CGQTFRFVSD  1260
FSRHKRKTGH STKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48430.1	0.0	C2H2 family protein