PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019160507.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

GRAS

Protein Properties

Length: 451aa MW: 50924.8 Da PI: 4.9542

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019160507.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	162	5e-50	144	397	3	253
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevsPilkfshl 96 Ll++Ae v + d a+++L+r el+s +g++++Rl++yf + L ++++ + ++ k+ +e+ e+ ++ + +f+e Pi ++ ++ XP_019160507.1 144 GYLLAAAEKVGQADYDSAEKILTRCDELSSHQGNSVERLVHYFNQSLWEKIFCqTEKGWGKKYDEEEDLEEALKSLVPCIIAFHEKVPISQVFQF 238 679***********************************************933444555555555555555555555566********* PP GRAS 97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlel 191 t q++ e v+ +++vHiiD++i G+QW L+q++a+ p+ p +l+iT++++++++ k e e+tg rL++fA++l++ f+fnv++ ++l + + XP_019160507.1 239 TSIQTVIEHVADARKVHIIDLEIRSGVQWTILMQSFAESPR-PEHLKITALQANKHQPKIEEETTGMRLRSFAQSLNLCFSFNVVALEDLLNGKE 332 **********************************665.58*****9999***********************99999999999 PP GRAS 192 eeLrvkp.......gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesF 253 ++L+ + +Ea++V ++ +++ ++es +++++ks++P+v+ ++e ea++ns F XP_019160507.1 333 SSLSGFQpdgeeeeEEAVVVYANCFFTTMISKQEKMES----LMRVIKSMNPRVMFLTEVEANMNSVGF 397 999444345566669*999999999988888888....*********************9876 PP
2	GRAS	26.2	9.5e-09	397	449	322	374
GRAS 322 aGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +G+k+++ls + + qa+l+l++++++ +++ + ++l+ gWk+ pL+s+SaW+ XP_019160507.1 397 FGMKEMELSMSSVYQASLVLKRFDGKSCTLDMDGKALTVGWKGTPLLSLSAWK 449 699*******************999***********************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 451 aa Download sequence
MGNSCFPPQN ATQNEANGEE EEDDHKILVL VDSPTLQDLY LDTAVQPPFQ LPDESSNKET 60 LTHPAILPSS LALLKRFGRR FSKLKTNPRR KRAEDESKKF STDAILRLAG HNFIQSFSHP 120 DSTASNSFLG LLSEQDRKDM ELVGYLLAAA EKVGQADYDS AEKILTRCDE LSSHQGNSVE 180 RLVHYFNQSL WEKIFCQTEK GWGKKYDEEE DLEEALKSLV PCIIAFHEKV PISQVFQFTS 240 IQTVIEHVAD ARKVHIIDLE IRSGVQWTIL MQSFAESPRP EHLKITALQA NKHQPKIEEE 300 TTGMRLRSFA QSLNLCFSFN VVALEDLLNG KESSLSGFQP DGEEEEEEAV VVYANCFFTT 360 MISKQEKMES LMRVIKSMNP RVMFLTEVEA NMNSVGFGMK EMELSMSSVY QASLVLKRFD 420 GKSCTLDMDG KALTVGWKGT PLLSLSAWKF L

Sequence ? help Back to Top

Protein Sequence Length: 451 aa Download sequence

MGNSCFPPQN ATQNEANGEE EEDDHKILVL VDSPTLQDLY LDTAVQPPFQ LPDESSNKET  60
LTHPAILPSS LALLKRFGRR FSKLKTNPRR KRAEDESKKF STDAILRLAG HNFIQSFSHP  120
DSTASNSFLG LLSEQDRKDM ELVGYLLAAA EKVGQADYDS AEKILTRCDE LSSHQGNSVE  180
RLVHYFNQSL WEKIFCQTEK GWGKKYDEEE DLEEALKSLV PCIIAFHEKV PISQVFQFTS  240
IQTVIEHVAD ARKVHIIDLE IRSGVQWTIL MQSFAESPRP EHLKITALQA NKHQPKIEEE  300
TTGMRLRSFA QSLNLCFSFN VVALEDLLNG KESSLSGFQP DGEEEEEEAV VVYANCFFTT  360
MISKQEKMES LMRVIKSMNP RVMFLTEVEA NMNSVGFGMK EMELSMSSVY QASLVLKRFD  420
GKSCTLDMDG KALTVGWKGT PLLSLSAWKF L

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03450.1	8e-27	GRAS family protein